Browse Element(s) Details


Os.52264.1.S1_at

Description gb:AK065965.1
DB_XREF= gi:32975983
TID=Os.52264.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047H01, full insert sequence.
FL= gb:AK065965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2537011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25310Os.7310.1.S1_at11/115+14610167..14623239AMP-binding enzyme family protein, expressed
LOC_Os05g25320Os.50190.1.S1_at10/115+14624020..14626949transposon protein, putative, unclassified, expressed
LOC_Os05g25330NANA5+14629613..14634041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g25340OsAffx.14823.1.S1_at11/115+14636415..14637182hypothetical protein
LOC_Os05g25350Os.50478.1.S1_at11/115+14638522..14643549Protein kinase domain containing protein, expressed
LOC_Os05g25360OsAffx.14824.1.S1_at11/115+14644792..14645392hypothetical protein
LOC_Os05g25360Os.49549.1.S1_at1/115+14644792..14645392hypothetical protein
LOC_Os05g25370Os.52264.1.S1_at11/115+14647842..14657746Protein kinase domain containing protein, expressed
LOC_Os05g25370OsAffx.8445.1.S1_at2/115+14647842..14657746Protein kinase domain containing protein, expressed
LOC_Os05g25380NANA5+14664034..14665794Zinc knuckle family protein
LOC_Os05g25390Os.27100.1.A1_at11/115+14671681..14675983Protein kinase domain containing protein, expressed
LOC_Os05g25390Os.20038.1.S1_at9/115+14671681..14675983Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52264.1.S1_at--180--4571Chr05:14657160..14657184 (25 bp)
GCGCCCTGCAGTGAACATAGAGCTT
LOC_Os05g25370
Os.52264.1.S1_at--611--5731Chr05:14657209..14657233 (25 bp)
GACTGGGCGCTATCTTGCCAGAAGA
LOC_Os05g25370
Os.52264.1.S1_at--586--2251Chr05:14657249..14657273 (25 bp)
AAATTATTGATCCACATCTCCATGG
LOC_Os05g25370
Os.52264.1.S1_at--878--831Chr05:14657270..14657294 (25 bp)
ATGGAGAAATCAGTCCTCCCTGCCT
LOC_Os05g25370
Os.52264.1.S1_at--511--4191Chr05:14657287..14657311 (25 bp)
CCCTGCCTTAGGATGTTTGCTGATT
LOC_Os05g25370
Os.52264.1.S1_at--591--3491Chr05:14657346..14657370 (25 bp)
CAGGCCGCTGATGAGTGATGTTCTT
LOC_Os05g25370
Os.52264.1.S1_at--695--10551Chr05:14657366..14657390 (25 bp)
TTCTTTGGAGTCTGGAAGCTGCACT
LOC_Os05g25370
Os.52264.1.S1_at--784--5971Chr05:14657451..14657475 (25 bp)
GAGAACACCAGACTTGATAACTATC
LOC_Os05g25370
Os.52264.1.S1_at--112--7691Chr05:14657478..14657502 (25 bp)
GGGTACTGACAAACCATCGACCTAC
LOC_Os05g25370
Os.52264.1.S1_at--709--8831Chr05:14657541..14657565 (25 bp)
TGATATGATGCACCCACAGGGCCGA
LOC_Os05g25370
Os.52264.1.S1_at--736--7431Chr05:14657668..14657692 (25 bp)
GTGTCAGTTTCTGTCTAACTAGAAC
LOC_Os05g25370
Target Sequence 
GCGCCCTGCAGTGAACATAGAGCTTCCTGAAGAGCAAGCAAGCTTGCGTGACTGGGCGCTATCTTGCCAGAAGAAAGGCA
TGCTTGGCAAAATTATTGATCCACATCTCCATGGAGAAATCAGTCCTCCCTGCCTTAGGATGTTTGCTGATTGTGCAAAA
CAATGTGTTGCTGATCGCAGCATCGACAGGCCGCTGATGAGTGATGTTCTTTGGAGTCTGGAAGCTGCACTGAAGCTGCA
AGAGAATGCAGAGAATAACAAAAAATTCAGTGAAGCAACAACATCGTCAAAGAGAACACCAGACTTGATAACTATCATGG
GTACTGACAAACCATCGACCTACTCAACAATGAGCATCACCGGACAAAAGATCATCTTCTCTGATATGATGCACCCACAG
GGCCGATGAAGGACAACAGTTGAGGATTTCAATTAATTTCTGATCCAGAGTTCATGTATTGATGATCTTTTGATCGCAAT
TACTAGAATATTGCATTATTGATCAATTGTGTCAGTTTCTGTCTAACTAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis