Browse Element(s) Details


OsAffx.14824.1.S1_at

Description tigr:9633.m02282
TID=OsAffx.14824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2536011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25310Os.7310.1.S1_at11/115+14610167..14623239AMP-binding enzyme family protein, expressed
LOC_Os05g25320Os.50190.1.S1_at10/115+14624020..14626949transposon protein, putative, unclassified, expressed
LOC_Os05g25330NANA5+14629613..14634041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g25340OsAffx.14823.1.S1_at11/115+14636415..14637182hypothetical protein
LOC_Os05g25350Os.50478.1.S1_at11/115+14638522..14643549Protein kinase domain containing protein, expressed
LOC_Os05g25360OsAffx.14824.1.S1_at11/115+14644792..14645392hypothetical protein
LOC_Os05g25360Os.49549.1.S1_at1/115+14644792..14645392hypothetical protein
LOC_Os05g25370Os.52264.1.S1_at11/115+14647842..14657746Protein kinase domain containing protein, expressed
LOC_Os05g25370OsAffx.8445.1.S1_at2/115+14647842..14657746Protein kinase domain containing protein, expressed
LOC_Os05g25380NANA5+14664034..14665794Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14824.1.S1_at--259--9111Chr05:14645210..14645259 (25 bp)
TGCTGCCACTGCTCCACGATGGCGT
LOC_Os05g25360
OsAffx.14824.1.S1_at--774--6311Chr05:14645270..14645294 (25 bp)
GATGACTGCGCGGTTATCGTCCTCC
LOC_Os05g25360
OsAffx.14824.1.S1_at--984--8931Chr05:14645272..14645296 (25 bp)
TGACTGCGCGGTTATCGTCCTCCAT
LOC_Os05g25360
OsAffx.14824.1.S1_at--221--1991Chr05:14645274..14645298 (25 bp)
ACTGCGCGGTTATCGTCCTCCATGA
LOC_Os05g25360
OsAffx.14824.1.S1_at--1126--9131Chr05:14645276..14645300 (25 bp)
TGCGCGGTTATCGTCCTCCATGAGG
LOC_Os05g25360
OsAffx.14824.1.S1_at--972--4671Chr05:14645279..14645303 (25 bp)
GCGGTTATCGTCCTCCATGAGGCGC
LOC_Os05g25360
OsAffx.14824.1.S1_at--438--7871Chr05:14645281..14645305 (25 bp)
GGTTATCGTCCTCCATGAGGCGCGC
LOC_Os05g25360
OsAffx.14824.1.S1_at--189--10431Chr05:14645283..14645307 (25 bp)
TTATCGTCCTCCATGAGGCGCGCGG
LOC_Os05g25360
OsAffx.14824.1.S1_at--257--511Chr05:14645285..14645309 (25 bp)
ATCGTCCTCCATGAGGCGCGCGGGA
LOC_Os05g25360
OsAffx.14824.1.S1_at--804--6211Chr05:14645297..14645321 (25 bp)
GAGGCGCGCGGGAGGCGTGACAGCA
LOC_Os05g25360
OsAffx.14824.1.S1_at--303--4671Chr05:14645304..14645328 (25 bp)
GCGGGAGGCGTGACAGCAGAGAGAT
LOC_Os05g25360
Target Sequence 
TGCTGCCACTGCTCCACGATGGCGTCGAGCACGCCGATGACTGCGCGGTTATCGTCCTCCATGAGGCGCGCGGGAGGCGT
GACAGCAGAGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis