Browse Element(s) Details


Os.50190.1.S1_at

Description gb:AK064846.1
DB_XREF= gi:32974864
TID=Os.50190.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000G11, full insert sequence.
FL= gb:AK122018.1 gb:AK064846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2532010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25280OsAffx.31069.1.S1_x_at1/115+14596637..14599484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25290NANA5+14600556..14603169transposon protein, putative, unclassified
LOC_Os05g25300OsAffx.22850.1.S1_x_at2/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.10596.1.S1_x_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.25260.1.S1_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.22850.1.S1_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25310Os.7310.1.S1_at11/115+14610167..14623239AMP-binding enzyme family protein, expressed
LOC_Os05g25320Os.50190.1.S1_at10/115+14624020..14626949transposon protein, putative, unclassified, expressed
LOC_Os05g25330NANA5+14629613..14634041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g25340OsAffx.14823.1.S1_at11/115+14636415..14637182hypothetical protein
LOC_Os05g25350Os.50478.1.S1_at11/115+14638522..14643549Protein kinase domain containing protein, expressed
LOC_Os05g25360OsAffx.14824.1.S1_at11/115+14644792..14645392hypothetical protein
LOC_Os05g25360Os.49549.1.S1_at1/115+14644792..14645392hypothetical protein
LOC_Os05g25370Os.52264.1.S1_at11/115+14647842..14657746Protein kinase domain containing protein, expressed
LOC_Os05g25370OsAffx.8445.1.S1_at2/115+14647842..14657746Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50190.1.S1_at--719--9531Chr05:14624535..14624559 (25 bp)
TCTAGCCCTCCGTTCAATTGAAGAA
LOC_Os05g25320
Os.50190.1.S1_at--217--2751Chr05:14624515..14624539 (25 bp)
AAGAACTGACTGACAAGCTTGCCGC
LOC_Os05g25320
Os.50190.1.S1_at--135--10711Chr05:14624497..14624521 (25 bp)
TTGCCGCTATTAACTTGACCCGACA
LOC_Os05g25320
Os.50190.1.S1_at--590--10671Chr05:14624461..14624485 (25 bp)
TTCCTCGGCCCAACATTTGTGATAA
LOC_Os05g25320
Os.50190.1.S1_at--520--891Chr05:14624348..14624372 (25 bp)
AGGCCTGCTGCGTTTGACAATAATA
LOC_Os05g25320
Os.50190.1.S1_at--767--1271Chr05:14624280..14624304 (25 bp)
AGATCTCAGGAGTCCATTTCAGGTA
LOC_Os05g25320
Os.50190.1.S1_at--708--6891Chr05:14624229..14624253 (25 bp)
GTATCAGTCCATCCTTGATGTCTGA
LOC_Os05g25320
Os.50190.1.S1_at--414--2291Chr05:14624198..14624222 (25 bp)
AAATGCAATAGTGTCCTTGTGCCCC
LOC_Os05g25320
Os.50190.1.S1_at--1077--1431Chr05:14624122..14624146 (25 bp)
AGAACGGTGCTAGCCTTGTTGACTT
LOC_Os05g25320
Os.50190.1.S1_at--346--3031NONE
AATGCCCTGCTGGAGCTAATGTGCT
NONE
Os.50190.1.S1_at--12--2051Chr05:14624027..14624051 (25 bp)
ACTTTGGTAGTGATTGCGCTCTTCC
LOC_Os05g25320
Target Sequence 
TCTAGCCCTCCGTTCAATTGAAGAACTGACTGACAAGCTTGCCGCTATTAACTTGACCCGACAAGATCAACACCTTCCTC
GGCCCAACATTTGTGATAAGAATGGGAAAGGGATCACCATGGGTGAGAGTAATACGATAGCTGAGAAGGTGCTTTCAGAA
AGCTGTCTAAAAGATCCAACAAAAATCAGGCCTGCTGCGTTTGACAATAATAGTGAGTCAGCAAGAAAGAGAAACAAAGT
GATGAAAGCGGTGCAAGATCTCAGGAGTCCATTTCAGGTAACAAAACTGACGGATTGAAGTACNGGGTATCAGTCCATCC
TTGATGTCTGATTATGTAAATGCAATAGTGTCCTTGTGCCCCCTTCTCTTAACTCGCTGACCTGTAAGGAAAGAAGGATT
TGCTGCACATGGGAGAACGGTGCTAGCCTTGTTGACTTCTTCTTTTTTTCTTTTTTTTTTTTTAGCAAATGCCCTGCTGG
AGCTAATGTGCTATAACGTCATTTTGGCACTTTGGTAGTGATTGCGCTCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis