Browse Element(s) Details


OsAffx.4425.1.S1_at

Description tigr:9633.m02287
TID=OsAffx.4425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2541011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25390Os.27100.1.A1_at11/115+14671681..14675983Protein kinase domain containing protein, expressed
LOC_Os05g25390Os.20038.1.S1_at9/115+14671681..14675983Protein kinase domain containing protein, expressed
LOC_Os05g25400Os.52154.1.S1_at11/115+14692430..14695010RNase3 domain containing protein, expressed
LOC_Os05g25410OsAffx.4425.1.S1_at11/115+14699663..14700287hypothetical protein
LOC_Os05g25420OsAffx.14826.1.S1_at11/115+14702266..14704025hypothetical protein
LOC_Os05g25430Os.53753.1.S1_at11/115+14706608..14710993protein kinase family protein, putative, expressed
LOC_Os05g25440NANA5+14715765..14716001hypothetical protein
LOC_Os05g25450Os.18927.1.S1_at11/115+14717443..14721558protein kinase family protein, putative, expressed
LOC_Os05g25460OsAffx.27009.1.S1_at11/115+14722708..14723435hypothetical protein
LOC_Os05g25470Os.41695.15.S1_s_at11/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.3.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.5.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.2.S1_x_at9/115+14725162..14731262transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4425.1.S1_at--805--1232Chr04:10703443..10703546 (25 bp)
AGTTGACACCAGAACAAAAGGCAGA
NONE
OsAffx.4425.1.S1_at--437--5371Chr05:14700173..14700197 (25 bp)
GAAGACCTGATGAACATGCTGCAGA
LOC_Os05g25410
OsAffx.4425.1.S1_at--167--1451Chr05:14700151..14700175 (25 bp)
AGAACCAATTTCTGCACTCATTTGT
LOC_Os05g25410
OsAffx.4425.1.S1_at--461--2011Chr05:14700136..14700160 (25 bp)
ACTCATTTGTTCAGACTCGCTCATG
LOC_Os05g25410
OsAffx.4425.1.S1_at--926--1991Chr05:14700122..14700146 (25 bp)
ACTCGCTCATGCACAGTAATCCAAA
LOC_Os05g25410
OsAffx.4425.1.S1_at--609--3291Chr05:14700101..14700125 (25 bp)
CAAAGGTACAAAGTGGCCCTGCCAA
LOC_Os05g25410
OsAffx.4425.1.S1_at--458--7551Chr05:14700089..14700113 (25 bp)
GTGGCCCTGCCAAATAATAAGGATC
LOC_Os05g25410
OsAffx.4425.1.S1_at--275--1291Chr05:14700027..14700051 (25 bp)
AGAGGAGACTCCTGTGGAACCCAAA
LOC_Os05g25410
OsAffx.4425.1.S1_at--547--8491Chr05:14700013..14700037 (25 bp)
TGGAACCCAAAAACTTGCAAGACCT
LOC_Os05g25410
OsAffx.4425.1.S1_at--505--2751Chr05:14699995..14700019 (25 bp)
AAGACCTAATTGATTATACTGTGCA
LOC_Os05g25410
OsAffx.4425.1.S1_at--336--8691Chr05:14699976..14700000 (25 bp)
TGTGCACAATGCTTTAACCAACCAA
LOC_Os05g25410
Target Sequence 
AGTTGACACCAGAACAAAAGGCAGAATGTGAAGACCTGATGAACATGCTGCAGAACCAATTTCTGCACTCATTTGTTCAG
ACTCGCTCATGCACAGTAATCCAAAGGTACAAAGTGGCCCTGCCAAATAATAAGGATCCAGAATCAAGTTCTGGGAAGGA
TAAAGAAGTCAAGCAAGAGGAGACTCCTGTGGAACCCAAAAACTTGCAAGACCTAATTGATTATACTGTGCACAATGCTT
TAACCAACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis