Browse Element(s) Details


OsAffx.4426.1.S1_at

Description tigr:9633.m02296
TID=OsAffx.4426.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2550011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25460OsAffx.27009.1.S1_at11/115+14722708..14723435hypothetical protein
LOC_Os05g25470Os.41695.15.S1_s_at11/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.3.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.5.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.2.S1_x_at9/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25480OsAffx.14827.1.S1_at11/115+14738266..14740584expressed protein
LOC_Os05g25490OsAffx.14625.1.S1_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25490OsAffx.14625.1.S1_x_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25500OsAffx.4426.1.S1_at11/115+14747224..14747754hypothetical protein
LOC_Os05g25510OsAffx.4427.1.S1_at11/115+14748062..14748397hypothetical protein
LOC_Os05g25520NANA5+14754772..14755125hypothetical protein
LOC_Os05g25530OsAffx.14828.1.S1_at11/115+14759455..14759947hypothetical protein
LOC_Os05g25540Os.54960.1.S1_at11/115+14762435..14765963Protein kinase domain containing protein, expressed
LOC_Os05g25550Os.52873.1.S1_a_at11/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25550OsAffx.5813.1.S1_x_at2/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25550Os.8093.2.S1_x_at1/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4426.1.S1_at--1010--8711Chr05:14747277..14747301 (25 bp)
TGTCTCTACTGCACGTGAGGGTGGA
LOC_Os05g25500
OsAffx.4426.1.S1_at--146--7731Chr05:14747296..14747320 (25 bp)
GGTGGATCCGCCATTCTCGAGCCAA
LOC_Os05g25500
OsAffx.4426.1.S1_at--189--511Chr05:14747392..14747416 (25 bp)
ATCGTGATCATGGTCGCTGCTCCTG
LOC_Os05g25500
OsAffx.4426.1.S1_at--601--9271Chr05:14747412..14747436 (25 bp)
TCCTGGTGCCGTGGTCACATGCTGT
LOC_Os05g25500
OsAffx.4426.1.S1_at--116--4411Chr05:14747454..14747478 (25 bp)
GCCACATGCGAGGACGGATCAGCCG
LOC_Os05g25500
OsAffx.4426.1.S1_at--932--10011Chr05:14747519..14747543 (25 bp)
TAGCAGCAGATTTGTCCTTCCCGAG
LOC_Os05g25500
OsAffx.4426.1.S1_at--1036--8491Chr05:14747549..14747573 (25 bp)
TGGCAGCATATCCATCCTTCCTGAG
LOC_Os05g25500
OsAffx.4426.1.S1_at--1047--3631Chr05:14747565..14747589 (25 bp)
CTTCCTGAGCCTGCCAACAGTGGAT
LOC_Os05g25500
OsAffx.4426.1.S1_at--1064--1951Chr05:14747605..14747629 (25 bp)
ACTGTGATCGTGGTTACCGCTCATG
LOC_Os05g25500
OsAffx.4426.1.S1_at--1109--6771Chr05:14747617..14747641 (25 bp)
GTTACCGCTCATGGTGACGTGGTCA
LOC_Os05g25500
OsAffx.4426.1.S1_at--212--2031Chr05:14747663..14747687 (25 bp)
ACTACTGCTCCTGTGGCTGTCCGAG
LOC_Os05g25500
Target Sequence 
TGTCTCTACTGCACGTGAGGGTGGATCCGCCATTCTCGAGCCAAGCGGCGGCGGATCCACCCTTTTTGAGCCCGCCGGCG
ACAGATCTGTCACTCCCGAGCCCACACGCGCAGCCATCGTGATCATGGTCGCTGCTCCTGGTGCCGTGGTCACATGCTGT
CCTTCGGCCTCCTTTCCGCCACATGCGAGGACGGATCAGCCGCTCCCGAGCCAGGCAGCGGATTCGTCCTTCCCGAGTCT
GCTAGCAGCAGATTTGTCCTTCCCGAGCCCGCTGGCAGCATATCCATCCTTCCTGAGCCTGCCAACAGTGGATCCACCGC
ACGCTGCCACTGTGATCGTGGTTACCGCTCATGGTGACGTGGTCACCACCGCTGCACGAAGCCAACACTACTGCTCCTGT
GGCTGTCCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis