Browse Element(s) Details


OsAffx.25591.1.S1_x_at

Description tigr:9631.m04567
TID=OsAffx.25591.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative xylan xylanohydrolase isoenzyme
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4701011/11Endo-1,4-beta-xylanase, putative, expressed
LOC_Os02g182801/11hypothetical protein
LOC_Os09g266901/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46970NANA3+26508848..26515006retrotransposon protein, putative, unclassified
LOC_Os03g46980NANA3+26515633..26518927retrotransposon protein, putative, unclassified
LOC_Os03g47000OsAffx.13383.1.S1_at11/113+26522011..26522485Chalcone and stilbene synthases, C-terminal domain containing protein
LOC_Os03g47010OsAffx.25591.1.S1_x_at11/113+26525670..26528227Endo-1,4-beta-xylanase, putative, expressed
LOC_Os03g47010OsAffx.14829.2.S1_x_at1/113+26525670..26528227Endo-1,4-beta-xylanase, putative, expressed
LOC_Os03g47016Os.57505.1.S1_x_at11/113+26530769..26531315Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g47016OsAffx.25593.1.S1_at4/113+26530769..26531315Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g47022OsAffx.25593.1.S1_at3/113+26534657..26535581Homeobox protein KNOX3, putative
LOC_Os03g47030OsAffx.25592.1.S1_at11/113+26540134..26541076hypothetical protein
LOC_Os03g47036OsAffx.25593.2.S1_at8/113+26552459..26554923Homeotic protein knotted-1, putative

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25591.1.S1_x_at--978--9151Chr03:26527636..26527660 (25 bp)
TGCGCTGCTGTTCGTCAACGACTAC
LOC_Os03g47010
OsAffx.25591.1.S1_x_at--208--8791Chr03:26527644..26527668 (25 bp)
TGTTCGTCAACGACTACAACGTCGA
LOC_Os03g47010
OsAffx.25591.1.S1_x_at--314--4031Chr03:26527704..26527728 (25 bp)
CGTACATCGCGCAGGTGACCGGGCT
LOC_Os03g47010
OsAffx.25591.1.S1_x_at--721--4271Chr03:26527834..26527858 (25 bp)
CCTGCCGCTGTGGTTCACGGAGCTG
LOC_Os03g47010
OsAffx.25591.1.S1_x_at--757--7452Chr03:26527862..26527886 (25 bp)
GTGTCGTCGGCGAACGAGCACGTCC
LOC_Os03g47010
OsAffx.25591.1.S1_x_at--57--7651Chr03:26527965..26527989 (25 bp)
GGGAGCTCTCCATGAGCCGCGACGA
LOC_Os03g47010
OsAffx.25591.1.S1_x_at--969--9111Chr03:26528040..26528064 (25 bp)
TGCTGCAGCTCAAGCGGGAGTGGCT
LOC_Os03g47010
OsAffx.25591.1.S1_x_at--679--5731Chr03:26528087..26528111 (25 bp)
GACGGCAACGGCGAGTTCAGGTTCC
LOC_Os03g47010
OsAffx.25591.1.S1_x_at--699--1891Chr03:26528121..26528145 (25 bp)
ACGGCGCGTACCACGTCGACGTCGT
LOC_Os03g47010
OsAffx.25591.1.S1_x_at--273--2811Chr03:26528162..26528186 (25 bp)
AAGATCTCCCAGGAGTTCACCGTCG
LOC_Os03g47010
OsAffx.25591.1.S1_x_at--157--992Chr03:26528172..26528196 (25 bp)
AGGAGTTCACCGTCGACAAGGATGA
LOC_Os03g47010
Target Sequence 
TGCGCTGCTGTTCGTCAACGACTACAACGTCGAGGGCGCGTGCGTCGACGTCCGCGCGACGCCCGAGGCGTACATCGCGC
AGGTGACCGGGCTGCAGGAGCAGGGCGCGGCGGTGGGCGGCGTCGGGCTGCAGGGCCACGTGACCGCGCCCGTCGGCGCC
GTCGTGCGCGCGGCGCTCGACCGGCTCGCCGTGCTGGGCCTGCCGCTGTGGTTCACGGAGCTGGACGTGTCGTCGGCGAA
CGAGCACGTCCGCGCCGACGACCTGGAGGCGATGCTCCGGGAGGCGTACGCGCACCCGGCGGTGGACGGCGTCGTGCTCT
GGGGGTTCTGGGAGCTCTCCATGAGCCGCGACGACGCCCACCTCGTCGACGCCGAGGGGGAGGTGAACGAGGCCGGCCGC
CGCCTGCTGCAGCTCAAGCGGGAGTGGCTCACCCGCGCGCACGGCCGCGCCGACGGCAACGGCGAGTTCAGGTTCCGGGG
CCACCACGGCGCGTACCACGTCGACGTCGTCACGCCCGCCGGCGCCAAGATCTCCCAGGAGTTCACCGTCGACAAGGATG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25591.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis