Browse Element(s) Details


OsAffx.2218.2.S1_s_at

Description tigr:9639.m04233
TID=OsAffx.2218.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4234011/11hypothetical protein
LOC_Os11g4551011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42320OsAffx.23634.2.S1_x_at11/111+24342521..24346789Eukaryotic aspartyl protease family protein
LOC_Os01g42330OsAffx.21375.1.S1_at11/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42330OsAffx.21375.2.S1_x_at7/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42330OsAffx.23250.2.S1_x_at1/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42340OsAffx.2218.2.S1_s_at11/111+24364935..24367043hypothetical protein
LOC_Os01g42350OsAffx.11437.1.S1_at11/111+24374392..24382766PDR5-like ABC transporter, putative
LOC_Os01g42360OsAffx.9141.2.A1_at11/111+24388110..24388406hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2218.2.S1_s_at--734--1872Chr01:24366577..24366601 (25 bp)
ACGTAGCTTGTAGCTTGTCAAGGTA
LOC_Os01g42340
OsAffx.2218.2.S1_s_at--4--10012Chr01:24366587..24366611 (25 bp)
TAGCTTGTCAAGGTACTGTGCCTAC
LOC_Os01g42340
OsAffx.2218.2.S1_s_at--867--7052Chr01:24366593..24366617 (25 bp)
GTCAAGGTACTGTGCCTACCTAGTA
LOC_Os01g42340
OsAffx.2218.2.S1_s_at--1033--2892Chr01:24366596..24366620 (25 bp)
AAGGTACTGTGCCTACCTAGTAGCC
LOC_Os01g42340
OsAffx.2218.2.S1_s_at--517--9912Chr01:24366600..24366624 (25 bp)
TACTGTGCCTACCTAGTAGCCTTTG
LOC_Os01g42340
OsAffx.2218.2.S1_s_at--651--9972Chr01:24366609..24366633 (25 bp)
TACCTAGTAGCCTTTGCTCCGGAAT
LOC_Os01g42340
OsAffx.2218.2.S1_s_at--807--10052Chr01:24366613..24366637 (25 bp)
TAGTAGCCTTTGCTCCGGAATTGTT
LOC_Os01g42340
OsAffx.2218.2.S1_s_at--112--6972Chr01:24366615..24366639 (25 bp)
GTAGCCTTTGCTCCGGAATTGTTAC
LOC_Os01g42340
OsAffx.2218.2.S1_s_at--767--4452Chr01:24366618..24366642 (25 bp)
GCCTTTGCTCCGGAATTGTTACCGG
LOC_Os01g42340
OsAffx.2218.2.S1_s_at--563--32Chr01:24366632..24366656 (25 bp)
ATTGTTACCGGATCATAGCTTCGTC
LOC_Os01g42340
OsAffx.2218.2.S1_s_at--443--6772Chr01:24366635..24366659 (25 bp)
GTTACCGGATCATAGCTTCGTCTCC
LOC_Os01g42340
Target Sequence 
ACGTAGCTTGTAGCTTGTCAAGGTACTGTGCCTACCTAGTAGCCTTTGCTCCGGAATTGTTACCGGATCATAGCTTCGTC
TCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2218.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis