Browse Element(s) Details


OsAffx.11437.1.S1_at

Description tigr:9629.m04059
TID=OsAffx.11437.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4235011/11PDR5-like ABC transporter, putative
LOC_Os01g423703/11PDR5-like ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42330OsAffx.21375.1.S1_at11/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42330OsAffx.21375.2.S1_x_at7/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42330OsAffx.23250.2.S1_x_at1/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42340OsAffx.2218.2.S1_s_at11/111+24364935..24367043hypothetical protein
LOC_Os01g42350OsAffx.11437.1.S1_at11/111+24374392..24382766PDR5-like ABC transporter, putative
LOC_Os01g42360OsAffx.9141.2.A1_at11/111+24388110..24388406hypothetical protein
LOC_Os01g42370OsAffx.11437.1.S1_at3/111+24392055..24400469PDR5-like ABC transporter, putative, expressed
LOC_Os01g42380Os.467.1.S1_a_at11/111+24401918..24408853PDR5-like ABC transporter, putative, expressed
LOC_Os01g42380Os.17966.1.A1_x_at2/111+24401918..24408853PDR5-like ABC transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11437.1.S1_at--607--1011Chr01:24374972..24374996 (25 bp)
AGGTTGCCATTGAATTCCCGTACAC
LOC_Os01g42350
OsAffx.11437.1.S1_at--1108--4011Chr01:24374954..24374978 (25 bp)
CGTACACACTTGTTCAGTCTGTCAT
LOC_Os01g42350
OsAffx.11437.1.S1_at--784--7432Chr01:24374916..24374940 (25 bp)
GTGTACTCGATGATTGGGTTCCAAT
LOC_Os01g42350
OsAffx.11437.1.S1_at--176--1092Chr01:24374887..24374911 (25 bp)
AGTGGCTAAATTCTTCTGGTACCTC
LOC_Os01g42350
OsAffx.11437.1.S1_at--688--851Chr01:24374817..24374841 (25 bp)
ATGGCTGTGGGCCTAACACCAAGCT
LOC_Os01g42350
OsAffx.11437.1.S1_at--274--9451Chr01:24374769..24374793 (25 bp)
TCGGCTTTCTATGCCATCTGGAACC
LOC_Os01g42350
OsAffx.11437.1.S1_at--669--9091Chr01:24374632..24374656 (25 bp)
TGCTCAGGCAACTCCAGTCTGGTGG
LOC_Os01g42350
OsAffx.11437.1.S1_at--435--7951Chr01:24374594..24374618 (25 bp)
GGATATGCCCTGTAGCATGGACACT
LOC_Os01g42350
OsAffx.11437.1.S1_at--500--3691Chr01:24374571..24374595 (25 bp)
CTATACGGGCTGATTGTCTCGCAAT
LOC_Os01g42350
OsAffx.11437.1.S1_at--937--851Chr01:24374519..24374543 (25 bp)
ATGGCATACCCGTGAATGTCTTCGT
LOC_Os01g42350
OsAffx.11437.1.S1_at--487--133Chr03:8989464..8989483 (20 bp)
ATTCACCATGTTATTTGCCTTCCTG
NONE
Target Sequence 
AGGTTGCCATTGAATTCCCGTACACACTTGTTCAGTCTGTCATATATAGCATCATAGTGTACTCGATGATTGGGTTCCAA
TGGACAGTGGCTAAATTCTTCTGGTACCTCTTCTTCATGTTCTTCACGCTGCTATACTTCACATTCTACGGCATGATGGC
TGTGGGCCTAACACCAAGCTACCATGTCGCCTCAATCGTCTCCTCGGCTTTCTATGCCATCTGGAACCTCTTCACCGGGT
TCGTCATCTCCAGACCGCTCAATTCCATTTTCCCTGGACCGTGTGCTCAGGCAACTCCAGTCTGGTGGAGATGGTACTGC
TGGATATGCCCTGTAGCATGGACACTATACGGGCTGATTGTCTCGCAATATGGAGATATCGTGACGCCGATGGATGATGG
CATACCCGTGAATGTCTTCGTGGAGAACTATTTTGACTTTAAGCACAGCTGGCTGGGTTTCGTGGCTGTGGTGATCGTCG
CATTCACCATGTTATTTGCCTTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis