Browse Element(s) Details


OsAffx.9141.2.A1_at

Description tigr:9629.m04060
TID=OsAffx.9141.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4236011/11hypothetical protein
LOC_Os12g308241/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42340OsAffx.2218.2.S1_s_at11/111+24364935..24367043hypothetical protein
LOC_Os01g42350OsAffx.11437.1.S1_at11/111+24374392..24382766PDR5-like ABC transporter, putative
LOC_Os01g42360OsAffx.9141.2.A1_at11/111+24388110..24388406hypothetical protein
LOC_Os01g42370OsAffx.11437.1.S1_at3/111+24392055..24400469PDR5-like ABC transporter, putative, expressed
LOC_Os01g42380Os.467.1.S1_a_at11/111+24401918..24408853PDR5-like ABC transporter, putative, expressed
LOC_Os01g42380Os.17966.1.A1_x_at2/111+24401918..24408853PDR5-like ABC transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9141.2.A1_at--802--8971Chr01:24388320..24388344 (25 bp)
TGAACACGCAGTTGAGGGTCAGGAT
LOC_Os01g42360
OsAffx.9141.2.A1_at--994--7692Chr12:18494516..18494535 (20 bp)
GGGTCAGGATGTGATTCGCCGTCTC
LOC_Os12g30824
OsAffx.9141.2.A1_at--646--5811Chr01:24388256..24388280 (25 bp)
GACCGAGTGGCTATCGTTGCCATTC
LOC_Os01g42360
OsAffx.9141.2.A1_at--467--4871Chr01:24388247..24388271 (25 bp)
GCTATCGTTGCCATTCTTCTGAAGG
LOC_Os01g42360
OsAffx.9141.2.A1_at--749--511Chr01:24388244..24388268 (25 bp)
ATCGTTGCCATTCTTCTGAAGGAGA
LOC_Os01g42360
OsAffx.9141.2.A1_at--612--10691Chr01:24388240..24388264 (25 bp)
TTGCCATTCTTCTGAAGGAGATCGG
LOC_Os01g42360
OsAffx.9141.2.A1_at--26--991Chr01:24388225..24388249 (25 bp)
AGGAGATCGGCCATCCAACAGCGTT
LOC_Os01g42360
OsAffx.9141.2.A1_at--847--8431Chr01:24388217..24388241 (25 bp)
GGCCATCCAACAGCGTTGCTGAAAT
LOC_Os01g42360
OsAffx.9141.2.A1_at--206--10011Chr01:24388167..24388191 (25 bp)
TAGCATGACCCTTCGCGTATTGACA
LOC_Os01g42360
OsAffx.9141.2.A1_at--638--5791Chr01:24388161..24388185 (25 bp)
GACCCTTCGCGTATTGACAAAAGAA
LOC_Os01g42360
OsAffx.9141.2.A1_at--893--1411Chr01:24388140..24388164 (25 bp)
AGAAATGTTGGCCATTGTGATCCCT
LOC_Os01g42360
Target Sequence 
TGAACACGCAGTTGAGGGTCAGGATGTGATTCGCCGTCTCAAGCTCCTGAGCGCAAAAAGGCCAGACCGAGTGGCTATCG
TTGCCATTCTTCTGAAGGAGATCGGCCATCCAACAGCGTTGCTGAAATGCAAACCAGAGGAAGAATTTGTATTTAGCATG
ACCCTTCGCGTATTGACAAAAGAAATGTTGGCCATTGTGATCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9141.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis