Browse Element(s) Details


Os.7594.1.S1_at

Description gb:AK068896.1
DB_XREF= gi:32978921
TID=Os.7594.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170E20, full insert sequence.
FL= gb:AK059489.1 gb:AK068896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4200011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41940Os.46557.1.S1_x_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.1.S1_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.2.S1_x_at6/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.10967.4.S1_at3/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.8753.4.S1_x_at2/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.7664.1.S1_x_at1/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41950Os.53156.1.S1_at11/115+24485986..24488598Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g41960NANA5+24492466..24492996hypothetical protein
LOC_Os05g41970Os.10338.1.S1_x_at11/115+24493695..2449450919 kDa globulin precursor, putative, expressed
LOC_Os05g41980OsAffx.19826.2.S1_at5/115+24495801..24496469Papain family cysteine protease containing protein
LOC_Os05g41990Os.153.1.S1_at11/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g41990OsAffx.23634.2.S1_x_at1/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g42000Os.7594.1.S1_at11/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42000OsAffx.16234.2.S1_x_at1/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42010Os.27655.1.A1_a_at11/115+24506106..24509799TraB family protein, expressed
LOC_Os05g42020Os.8279.1.S1_at11/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_x_at5/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_at1/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42030Os.14919.1.S1_at4/115+24518779..24521724hypothetical protein
LOC_Os05g42030OsAffx.29313.1.S1_at1/115+24518779..24521724hypothetical protein
LOC_Os05g42040Os.28129.1.S1_at11/115+24522508..24524718Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42060Os.28129.1.S1_at1/115+24528548..24530014Cytokinin-O-glucosyltransferase 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7594.1.S1_at--895--4691Chr05:24505299..24505323 (25 bp)
GCGGCTTCACATTCGACCTGAGCTA
LOC_Os05g42000
Os.7594.1.S1_at--234--8431Chr05:24505349..24505373 (25 bp)
GGCCTGTTCCAGTCGGACGGCAGCC
LOC_Os05g42000
Os.7594.1.S1_at--427--3191Chr05:24505468..24505492 (25 bp)
CAAGATGGGCCGCACCGACGTGCTC
LOC_Os05g42000
Os.7594.1.S1_at--305--7811Chr05:24505510..24505534 (25 bp)
GGTCAGGCCGACGTGTGACAGCCTC
LOC_Os05g42000
Os.7594.1.S1_at--936--7351Chr05:24505524..24505548 (25 bp)
GTGACAGCCTCGTCGACTAGTTTAT
LOC_Os05g42000
Os.7594.1.S1_at--164--3791Chr05:24505532..24505556 (25 bp)
CTCGTCGACTAGTTTATTCGGCGTC
LOC_Os05g42000
Os.7594.1.S1_at--474--7251Chr05:24505554..24505578 (25 bp)
GTCCCGCCACATTTGTGATCTGTAG
LOC_Os05g42000
Os.7594.1.S1_at--42--5231Chr05:24505578..24505602 (25 bp)
GAATTTTATATGGTTTTCTCTGTAA
LOC_Os05g42000
Os.7594.1.S1_at--552--6651Chr05:24505653..24505677 (25 bp)
GTTGCAGTTTCTACGCTTTTGAGGA
LOC_Os05g42000
Os.7594.1.S1_at--655--1391Chr05:24505677..24505701 (25 bp)
AGACTGATTGGAACAGCGTATGAAT
LOC_Os05g42000
Os.7594.1.S1_at--412--6072Chr05:24505705..24505729 (25 bp)
GAGTTAAACACTTGTCAGTTGTCAA
LOC_Os05g42000
Target Sequence 
GCGGCTTCACATTCGACCTGAGCTACTACCGGCACGTGCTCGCCACGGGCGGCCTGTTCCAGTCGGACGGCAGCCTCCGC
GACGACCCCGTCACGAGGGGCTACGTCGAGAAGCTCGCCAACGCGTCGTCGTCGGAGGAGTACTTCGCCGACTTCGCGGC
GGCGATGGTCAAGATGGGCCGCACCGACGTGCTCACCGGCGATCTCGGGGCGGTCAGGCCGACGTGTGACAGCCTCGTCG
ACTAGTTTATTCGGCGTCCCGCCACATTTGTGATCTGTAGAATTTTATATGGTTTTCTCTGTAACATATATGTAATTTCG
ATTTAGATTAGGGAAAGGTTGAGACTTGAGAGAAGTTGCAGTTTCTACGCTTTTGAGGAGACTGATTGGAACAGCGTATG
AATCTAGAGTTAAACACTTGTCAGTTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis