Browse Element(s) Details


Os.28129.1.S1_at

Description gb:AK103146.1
DB_XREF= gi:32988355
TID=Os.28129.1
CNT=12
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.28129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120I02, full insert sequence.
FL= gb:AK064392.1 gb:AK103146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4204011/11Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g420601/11Cytokinin-O-glucosyltransferase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41990Os.153.1.S1_at11/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g41990OsAffx.23634.2.S1_x_at1/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g42000Os.7594.1.S1_at11/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42000OsAffx.16234.2.S1_x_at1/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42010Os.27655.1.A1_a_at11/115+24506106..24509799TraB family protein, expressed
LOC_Os05g42020Os.8279.1.S1_at11/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_x_at5/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_at1/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42030Os.14919.1.S1_at4/115+24518779..24521724hypothetical protein
LOC_Os05g42030OsAffx.29313.1.S1_at1/115+24518779..24521724hypothetical protein
LOC_Os05g42040Os.28129.1.S1_at11/115+24522508..24524718Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42060Os.28129.1.S1_at1/115+24528548..24530014Cytokinin-O-glucosyltransferase 1, putative
LOC_Os05g42070OsAffx.4594.1.S1_at11/115+24532997..24534158UDP-glucose:flavonoid-O-glucosyltransferase, putative
LOC_Os05g42080OsAffx.27281.1.S1_at10/115+24535221..24535753expressed protein
LOC_Os05g42080OsAffx.22604.1.S1_x_at2/115+24535221..24535753expressed protein
LOC_Os05g42090OsAffx.4595.1.S1_at11/115+24537573..24538328hypothetical protein
LOC_Os05g42100Os.17764.1.S1_at10/115+24540121..24541414expressed protein
LOC_Os05g42110NANA5+24543296..24543595hypothetical protein
LOC_Os05g42120Os.56954.1.S1_at10/115+24544014..24545955heat shock protein, putative, expressed
LOC_Os05g42130Os.53020.1.S1_at11/115+24547965..24549508GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28129.1.S1_at--1087--6731Chr05:24524132..24524156 (25 bp)
GTTCATCACGGAAAGGCTGGTCATG
LOC_Os05g42040
Os.28129.1.S1_at--830--3891Chr05:24524148..24524172 (25 bp)
CTGGTCATGGACGTCCTGCGGATTG
LOC_Os05g42040
Os.28129.1.S1_at--452--7731Chr05:24524346..24524370 (25 bp)
GGTGGCTCTTCGTATGGAGATCTGC
LOC_Os05g42040
Os.28129.1.S1_at--500--8552Chr05:24524360..24524384 (25 bp)
TGGAGATCTGCGCAGGCTCATCGAC
LOC_Os05g42040
Os.28129.1.S1_at--352--4831Chr05:24524375..24524399 (25 bp)
GCTCATCGACGATCTTGTTGAAGCA
LOC_Os05g42040
Os.28129.1.S1_at--180--5171Chr05:24524426..24524450 (25 bp)
GCAACCTCTGTAACCTGTCGTTTCT
LOC_Os05g42040
Os.28129.1.S1_at--937--7191Chr05:24524442..24524466 (25 bp)
GTCGTTTCTCTATACGATACCGAGA
LOC_Os05g42040
Os.28129.1.S1_at--155--6491Chr05:24524457..24524481 (25 bp)
GATACCGAGACATTCGTTCCAGACT
LOC_Os05g42040
Os.28129.1.S1_at--1073--3411Chr05:24524476..24524500 (25 bp)
CAGACTCCATCCAGTTCATCTCGTT
LOC_Os05g42040
Os.28129.1.S1_at--849--451Chr05:24524493..24524517 (25 bp)
ATCTCGTTCTGTTGCGTTCAATCAA
LOC_Os05g42040
Os.28129.1.S1_at--776--6871Chr05:24524536..24524560 (25 bp)
GTATTGATACATGGGATCACCTATA
LOC_Os05g42040
Target Sequence 
GTTCATCACGGAAAGGCTGGTCATGGACGTCCTGCGGATTGGGGAGAGNGTGTGGGACGGAGCACGAAGTGTACGGTACA
AGGAGGCGGCGCTGGTGCCGGCGGCGGCGGTGGCGCGGGCCGTGGCGAGGTTCTTGGAGCCTGGAGGGGCAGGGGACGCG
GCGAGGATCAGAGCGCAGGATTTCGCGGCGGAGGCTCATGCGGCCGTGGCGGAAGGTGGCTCTTCGTATGGAGATCTGCG
CAGGCTCATCGACGATCTTGTTGAAGCAAGGGCGGACGNCGGCGAGTCCGCGCTGCAACCTCTGTAACCTGTCGTTTCTC
TATACGATACCGAGACATTCGTTCCAGACTCCATCCAGTTCATCTCGTTCTGTTGCGTTCAATCAAAATAAATTACGATG
TGATGTATTGATACATGGGATCACCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis