Browse Element(s) Details


OsAffx.27281.1.S1_at

Description tigr:9633.m03950
TID=OsAffx.27281.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4208010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42020Os.8279.1.S1_at11/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_x_at5/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_at1/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42030Os.14919.1.S1_at4/115+24518779..24521724hypothetical protein
LOC_Os05g42030OsAffx.29313.1.S1_at1/115+24518779..24521724hypothetical protein
LOC_Os05g42040Os.28129.1.S1_at11/115+24522508..24524718Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42060Os.28129.1.S1_at1/115+24528548..24530014Cytokinin-O-glucosyltransferase 1, putative
LOC_Os05g42070OsAffx.4594.1.S1_at11/115+24532997..24534158UDP-glucose:flavonoid-O-glucosyltransferase, putative
LOC_Os05g42080OsAffx.27281.1.S1_at10/115+24535221..24535753expressed protein
LOC_Os05g42080OsAffx.22604.1.S1_x_at2/115+24535221..24535753expressed protein
LOC_Os05g42090OsAffx.4595.1.S1_at11/115+24537573..24538328hypothetical protein
LOC_Os05g42100Os.17764.1.S1_at10/115+24540121..24541414expressed protein
LOC_Os05g42110NANA5+24543296..24543595hypothetical protein
LOC_Os05g42120Os.56954.1.S1_at10/115+24544014..24545955heat shock protein, putative, expressed
LOC_Os05g42130Os.53020.1.S1_at11/115+24547965..24549508GRAS family transcription factor containing protein, expressed
LOC_Os05g42140OsAffx.15067.1.S1_at11/115+24549853..24550554expressed protein
LOC_Os05g42150Os.16010.1.S1_at11/115+24560400..24562711Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27281.1.S1_at--77--10631NONE
TTCGAGCTTTTCGTCACCGAGAGGC
NONE
OsAffx.27281.1.S1_at--641--9371Chr05:24535464..24535488 (25 bp)
TCGAGATCGGAGAGCGCTTATGGCC
LOC_Os05g42080
OsAffx.27281.1.S1_at--578--6111Chr05:24535490..24535514 (25 bp)
GAGGGCGCCGGAGTACGAAATACCA
LOC_Os05g42080
OsAffx.27281.1.S1_at--1154--8031Chr05:24535522..24535546 (25 bp)
GGAGAAGGAGGTCGTCCCCGCGAAG
LOC_Os05g42080
OsAffx.27281.1.S1_at--756--4491Chr05:24535559..24535583 (25 bp)
GCCGTGACGAAGTTCATGGAGCCAG
LOC_Os05g42080
OsAffx.27281.1.S1_at--1010--2911Chr05:24535615..24535639 (25 bp)
AAGGAGCTCGCCGTGAAGGCTAATG
LOC_Os05g42080
OsAffx.27281.1.S1_at--171--7351Chr05:24535627..24535651 (25 bp)
GTGAAGGCTAATGCCGCCGTAGCAG
LOC_Os05g42080
OsAffx.27281.1.S1_at--505--1471Chr05:24535650..24535674 (25 bp)
AGAAGGCGGCTCATCGCACCGTGAT
LOC_Os05g42080
OsAffx.27281.1.S1_at--505--6411Chr05:24535672..24535696 (25 bp)
GATCTGCTCCGCCTTATCGATGATC
LOC_Os05g42080
OsAffx.27281.1.S1_at--441--4211Chr05:24535680..24535704 (25 bp)
CCGCCTTATCGATGATCTCATGCAA
LOC_Os05g42080
OsAffx.27281.1.S1_at--1088--6411Chr05:24535693..24535717 (25 bp)
GATCTCATGCAAGCCAAGTAATGGT
LOC_Os05g42080
Target Sequence 
TTCGAGCTTTTCGTCACCGAGAGGCTCGTGACGAAGGTGCTCGAGATCGGAGAGCGCTTATGGCCGGAGGGCGCCGGAGT
ACGAAATACCAAGGATGAGGAGAAGGAGGTCGTCCCCGCGAAGGCGGTGGCGGAGGCCGTGACGAAGTTCATGGAGCCAG
GAGGGGCAGGGAGGCGGCGAGATGCGCCATCAAGGAGCTCGCCGTGAAGGCTAATGCCGCCGTAGCAGAAGGCGGCTCAT
CGCACCGTGATCTGCTCCGCCTTATCGATGATCTCATGCAAGCCAAGTAATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis