Browse Element(s) Details


Os.16010.1.S1_at

Description gb:AK101932.1
DB_XREF= gi:32987141
TID=Os.16010.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073H12, full insert sequence.
FL= gb:AK101932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4215011/11Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os10g391301/11Agamous-like MADS box protein AGL19, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42080OsAffx.27281.1.S1_at10/115+24535221..24535753expressed protein
LOC_Os05g42080OsAffx.22604.1.S1_x_at2/115+24535221..24535753expressed protein
LOC_Os05g42090OsAffx.4595.1.S1_at11/115+24537573..24538328hypothetical protein
LOC_Os05g42100Os.17764.1.S1_at10/115+24540121..24541414expressed protein
LOC_Os05g42110NANA5+24543296..24543595hypothetical protein
LOC_Os05g42120Os.56954.1.S1_at10/115+24544014..24545955heat shock protein, putative, expressed
LOC_Os05g42130Os.53020.1.S1_at11/115+24547965..24549508GRAS family transcription factor containing protein, expressed
LOC_Os05g42140OsAffx.15067.1.S1_at11/115+24549853..24550554expressed protein
LOC_Os05g42150Os.16010.1.S1_at11/115+24560400..24562711Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os05g42160NANA5+24564203..24564565hypothetical protein
LOC_Os05g42170NANA5+24575227..24575628transposon protein, putative, unclassified
LOC_Os05g42180OsAffx.27283.3.S1_at11/115+24580707..24582902hypothetical protein
LOC_Os05g42190Os.9320.1.S1_at11/115+24586462..24589916Flavoprotein wrbA, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0010252biological_processauxin homeostasis
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16010.1.S1_at--477--7411Chr05:24560970..24560994 (25 bp)
GTGTTCGAGGACTGCTGCCTCGCCG
LOC_Os05g42150
Os.16010.1.S1_at--980--1931Chr05:24560753..24560777 (25 bp)
ACGGCAGGGTGCAGGCCACCTACTT
LOC_Os05g42150
Os.16010.1.S1_at--28--2851Chr05:24560721..24560745 (25 bp)
AAGTGCCCCAAATGGTGCGCCGGCG
LOC_Os05g42150
Os.16010.1.S1_at--411--4091Chr05:24560651..24560675 (25 bp)
CGACGACCTGTGATAGCTTGGCTGT
LOC_Os05g42150
Os.16010.1.S1_at--710--1471Chr05:24560619..24560643 (25 bp)
AGAATTTGCTAGCTATGGTGATTAA
LOC_Os05g42150
Os.16010.1.S1_at--1060--111Chr05:24560565..24560589 (25 bp)
ATTAATCGGTTAGCTAATCAACGAG
LOC_Os05g42150
Os.16010.1.S1_at--692--2991Chr05:24560550..24560574 (25 bp)
AATCAACGAGTGTTAGTTCAGGGTA
LOC_Os05g42150
Os.16010.1.S1_at--440--6751Chr05:24560535..24560559 (25 bp)
GTTCAGGGTAGTAGTACGTACGTAT
LOC_Os05g42150
Os.16010.1.S1_at--886--6991Chr05:24560522..24560546 (25 bp)
GTACGTACGTATGATCATCTAGCTA
LOC_Os05g42150
Os.16010.1.S1_at--653--6431Chr05:24560510..24560534 (25 bp)
GATCATCTAGCTATTGGGCTTTTGT
LOC_Os05g42150
Os.16010.1.S1_at--322--10592Chr10:20537861..20538076 (25 bp)
TTCTCCTCTCTCACTTTTGTAATAA
LOC_Os10g39130
Target Sequence 
GTGTTCGAGGACTGCTGCCTCGCCGTCGAGGAAGGGCTCAACAGCGTGTACCNCCAGTNGCCGCGCCGCCGACCGGTCGA
TCGGNCCGCTGGAGATCCGCGTCGTNGCGGACGGCACGNTTCGACAAGCTCATGGACTACGCGCTCAGCCGCGGCGCGTC
CATCAACCAGTACAAGGCGCCGCGCTGCGTGCGCCCGGGCCCCGTCGTCGAGCTGNCTCGACGGCAGGGTGCAGGCCACC
TACTTCAGCCCCAAGTGCCCCAAATGGTGCGCCGGCGGCAACAAGCAGTGGATCAGCAGCGGCGCCGCCGCGAAGAAGAC
GACGACGACCTGTGATAGCTTGGCTGTNTGAGAGAGAATTTGCTAGCTATGGTGATTAATTAAGGAGCTAATTAAGCATG
GATGGTTGATTAATCGGTTAGCTAATCAACGAGTGTTAGTTCAGGGTAGTAGTACGTACGTATGATCATCTAGCTATTGG
GCTTTTGTTTTNTTTTCTTTTCTCCTCTCTCACTTTTGTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis