Browse Element(s) Details


OsAffx.15066.1.S1_x_at

Description tigr:9633.m03944
TID=OsAffx.15066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=betanidin-5-O-glucosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g420205/11Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os01g124201/11D-mannose binding lectin family protein, expressed
LOC_Os01g124301/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41950Os.53156.1.S1_at11/115+24485986..24488598Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g41960NANA5+24492466..24492996hypothetical protein
LOC_Os05g41970Os.10338.1.S1_x_at11/115+24493695..2449450919 kDa globulin precursor, putative, expressed
LOC_Os05g41980OsAffx.19826.2.S1_at5/115+24495801..24496469Papain family cysteine protease containing protein
LOC_Os05g41990Os.153.1.S1_at11/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g41990OsAffx.23634.2.S1_x_at1/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g42000Os.7594.1.S1_at11/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42000OsAffx.16234.2.S1_x_at1/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42010Os.27655.1.A1_a_at11/115+24506106..24509799TraB family protein, expressed
LOC_Os05g42020Os.8279.1.S1_at11/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_x_at5/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_at1/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42030Os.14919.1.S1_at4/115+24518779..24521724hypothetical protein
LOC_Os05g42030OsAffx.29313.1.S1_at1/115+24518779..24521724hypothetical protein
LOC_Os05g42040Os.28129.1.S1_at11/115+24522508..24524718Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42060Os.28129.1.S1_at1/115+24528548..24530014Cytokinin-O-glucosyltransferase 1, putative
LOC_Os05g42070OsAffx.4594.1.S1_at11/115+24532997..24534158UDP-glucose:flavonoid-O-glucosyltransferase, putative
LOC_Os05g42080OsAffx.27281.1.S1_at10/115+24535221..24535753expressed protein
LOC_Os05g42080OsAffx.22604.1.S1_x_at2/115+24535221..24535753expressed protein
LOC_Os05g42090OsAffx.4595.1.S1_at11/115+24537573..24538328hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016301molecular_functionkinase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15066.1.S1_x_at--1134--5111Chr05:24513135..24513159 (25 bp)
GAAGGCGGGTCCTCGTACCGCGATC
LOC_Os05g42020
OsAffx.15066.1.S1_x_at--634--9491Chr05:24513158..24513182 (25 bp)
TCTGCGCAGGCTCGTCGACGATATG
LOC_Os05g42020
OsAffx.15066.1.S1_x_at--96--9371NONE
TCGACGATATGCTATTCTTCGCCAT
NONE
OsAffx.15066.1.S1_x_at--84--10213Chr05:24513851..24513875 (25 bp)
TATTCTTCGCCATTCTTGACAATCT
LOC_Os05g42020
OsAffx.15066.1.S1_x_at--472--5591Chr05:24513868..24513892 (25 bp)
GACAATCTCCAAGGGTTCTCTTACA
LOC_Os05g42020
OsAffx.15066.1.S1_x_at--317--7891Chr05:24513881..24513905 (25 bp)
GGTTCTCTTACAACGCTCGGGACGA
LOC_Os05g42020
OsAffx.15066.1.S1_x_at--952--4131NONE
CGCTCGGGACGAGCCAGATCAAGAT
NONE
OsAffx.15066.1.S1_x_at--1078--1631Chr05:24514390..24514414 (25 bp)
AGCGACGGCGAAACCCGGCACGGCA
NONE
OsAffx.15066.1.S1_x_at--1016--4591Chr05:24514397..24514421 (25 bp)
GCGAAACCCGGCACGGCACAGTGGC
NONE
OsAffx.15066.1.S1_x_at--578--7731Chr05:24514592..24514616 (25 bp)
GGTGTCCTCCAGATCCGTGCGACTC
NONE
OsAffx.15066.1.S1_x_at--977--6371Chr05:24514603..24514627 (25 bp)
GATCCGTGCGACTCGGCTGGATCTG
NONE
Target Sequence 
GAAGGCGGGTCCTCGTACCGCGATCTGCGCAGGCTCGTCGACGATATGCTATTCTTCGCCATTCTTGACAATCTCCAAGG
GTTCTCTTACAACGCTCGGGACGAGCCAGATCAAGATCAAGAAGGCAACGGAGTGGCGACGGCGTGGGCGGTGCCCGGTG
GTGCGGCGACGGGCGAGGCCGACTCCGCGTGGAGGCGTGCGCGGAGCCCGTGCGACGGCGGCAGCTTCGGCTGGCGCAGC
ATTGGCGGGGCAGCTCGGCCAGCGACGGCGAAACCCGGCACGGCACAGTGGCGGCAGTGCGTGGCGTGGTGGCGGCGGTG
CATGGCAGGCGGAGGCCGGCACGGTGGCACTGGTGGCGGCGGGGTGACGGCTGGTGGCAGTGGTTTGGTCGTGGGAGCGA
AGGAGGCGACGGCGGCGCCTGGTGGTGGTCGTGGCGGCGCGGTGCTCGGTGACGACGGCGGCGGTGTCCTCCAGATCCGT
GCGACTCGGCTGGATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15066.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis