Browse Element(s) Details


OsAffx.15064.1.S1_at

Description tigr:9633.m03933
TID=OsAffx.15064.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4192011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41880NANA5+24439704..24449084MutS domain V family protein, expressed
LOC_Os05g41890OsAffx.27280.1.S1_at11/115+24450020..24452523expressed protein
LOC_Os05g41890OsAffx.27097.1.S1_at1/115+24450020..24452523expressed protein
LOC_Os05g41900Os.7715.1.S1_a_at11/115+24454593..24456729Protein translation factor SUI1 homolog, putative, expressed
LOC_Os05g41910Os.20824.1.S1_at6/115+24457976..24461094expressed protein
LOC_Os05g41910OsAffx.1609.1.A1_x_at1/115+24457976..24461094expressed protein
LOC_Os05g41920OsAffx.15064.1.S1_at11/115+24467975..24468640expressed protein
LOC_Os05g41930Os.5023.1.S1_at11/115+24469194..24471959gda-1, putative, expressed
LOC_Os05g41940Os.46557.1.S1_x_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.1.S1_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.2.S1_x_at6/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.10967.4.S1_at3/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.8753.4.S1_x_at2/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.7664.1.S1_x_at1/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41950Os.53156.1.S1_at11/115+24485986..24488598Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g41960NANA5+24492466..24492996hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15064.1.S1_at--774--10191Chr05:24468036..24468324 (25 bp)
TATTCAGACTGAAACAGAAGCTACA
LOC_Os05g41920
OsAffx.15064.1.S1_at--1112--2691Chr05:24468317..24468341 (25 bp)
AAGCTACAAATACGTCGTCTCTCGC
LOC_Os05g41920
OsAffx.15064.1.S1_at--1047--3051Chr05:24468325..24468349 (25 bp)
AATACGTCGTCTCTCGCACGAACGG
LOC_Os05g41920
OsAffx.15064.1.S1_at--513--4111Chr05:24468343..24468367 (25 bp)
CGAACGGCCTCTTCGATATTCAGAA
LOC_Os05g41920
OsAffx.15064.1.S1_at--1039--3911Chr05:24468347..24468371 (25 bp)
CGGCCTCTTCGATATTCAGAAGACT
LOC_Os05g41920
OsAffx.15064.1.S1_at--907--2791Chr05:24468380..24468404 (25 bp)
AAGATGGGCAATTGCGCCGCCGCGC
LOC_Os05g41920
OsAffx.15064.1.S1_at--128--1911Chr05:24468449..24468473 (25 bp)
ACGGGCGTCGAGGTGAGGATCAGGA
LOC_Os05g41920
OsAffx.15064.1.S1_at--704--7751Chr05:24468538..24468562 (25 bp)
GGTGATTGCGGGTATCATCAACGCC
LOC_Os05g41920
OsAffx.15064.1.S1_at--810--51Chr05:24468542..24468566 (25 bp)
ATTGCGGGTATCATCAACGCCGGCG
LOC_Os05g41920
OsAffx.15064.1.S1_at--375--4611Chr05:24468564..24468588 (25 bp)
GCGAGGTGGTTGATCACCACCAACA
LOC_Os05g41920
OsAffx.15064.1.S1_at--894--7491Chr05:24468569..24468593 (25 bp)
GTGGTTGATCACCACCAACAACGGC
LOC_Os05g41920
Target Sequence 
TATTCAGACTGAAACAGAAGCTACAAATACGTCGTCTCTCGCACGAACGGCCTCTTCGATATTCAGAAGACTGCAAGAAG
AAGATGGGCAATTGCGCCGCCGCGCCGTCAGACGACGGCGAGCTTGGGTCGCCGGAGAGGGAGGAGATGACGGGCGTCGA
GGTGAGGATCAGGATCAGCAAGAGGCAGCTGCAGGAGTTGCTGGAGATGGCGTCCATGACCGCCGCCGGCGACGAGAAGG
TGATTGCGGGTATCATCAACGCCGGCGAGGTGGTTGATCACCACCAACAACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis