Browse Element(s) Details

Os.50945.1.S2_at

Description

gb:AK059610.1
DB_XREF= gi:32969628
TID=Os.50945.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50945 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F07, full insert sequence.
FL= gb:AK059610.1 gb:AK066655.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39480	10/11	transcription elongation factor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39450	Os.2987.3.S1_x_at	1/11	6	+	23424305..23428378	transposon protein, putative, unclassified
LOC_Os06g39460	Os.56073.1.S1_at	9/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.8753.4.S1_x_at	8/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.2.S1_x_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.1.S1_x_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.1.S1_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.8753.4.S1_at	2/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	OsAffx.5618.1.S1_x_at	1/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	OsAffx.5618.1.S1_at	1/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39470	Os.49692.1.S1_at	3/11	6	+	23437878..23439327	Transferase family protein, expressed
LOC_Os06g39470	OsAffx.9719.1.S1_x_at	1/11	6	+	23437878..23439327	Transferase family protein, expressed
LOC_Os06g39480	Os.50945.1.S1_at	11/11	6	+	23441893..23448456	transcription elongation factor, putative, expressed
LOC_Os06g39480	Os.50945.1.S2_at	10/11	6	+	23441893..23448456	transcription elongation factor, putative, expressed
LOC_Os06g39500	OsAffx.28009.1.S1_at	11/11	6	+	23450678..23451183	hypothetical protein
LOC_Os06g39510	OsAffx.15841.1.S1_at	11/11	6	+	23455589..23455906	hypothetical protein
LOC_Os06g39520	Os.50243.1.S1_at	11/11	6	+	23466237..23470677	Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50945.1.S2_at--178--229	1	Chr06:23442435..23442459 (25 bp)	AAATGCACGCGTATCATCAGCAGCA	LOC_Os06g39480
Os.50945.1.S2_at--900--505	1	Chr06:23442401..23442425 (25 bp)	GCAGCAGCATTACCAATCCATTCAG	LOC_Os06g39480
Os.50945.1.S2_at--922--1049	1	Chr06:23442381..23442405 (25 bp)	TTCAGCAGTATCACGCAACACAGGA	LOC_Os06g39480
Os.50945.1.S2_at--44--95	1	Chr06:23442360..23442384 (25 bp)	AGGAATCGCAGAACACCTTGTCCCA	LOC_Os06g39480
Os.50945.1.S2_at--748--151	1	Chr06:23442288..23442312 (25 bp)	AGCAGCTGACTCATTTGCAGCCTGG	LOC_Os06g39480
Os.50945.1.S2_at--567--293	1	Chr06:23442153..23442177 (25 bp)	AAGGCTACGCTACTGGGAACCAAGG	LOC_Os06g39480
Os.50945.1.S2_at--985--55	1	Chr06:23442124..23442148 (25 bp)	ATGCCTTGGAACCTACAGTAGCTAC	LOC_Os06g39480
Os.50945.1.S2_at--275--157	1	Chr06:23442105..23442129 (25 bp)	AGCTACGTTACCTTTGTGCGAGTCA	LOC_Os06g39480
Os.50945.1.S2_at--1103--461	1	Chr06:23442088..23442112 (25 bp)	GCGAGTCAGCAAGCATCCGATGTTT	LOC_Os06g39480
Os.50945.1.S2_at--944--371	1	Chr06:23441968..23441992 (25 bp)	CTAGCCGCTTAGGTAGTTGCTGGTT	LOC_Os06g39480
Os.50945.1.S2_at--917--907	1	Chr06:23441881..23441905 (25 bp)	TGCTAGGCTGCTACTTTGGTTTTTT	NONE

Target Sequence

AAATGCACGCGTATCATCAGCAGCATCAGCAACAGCAGCAGCATTACCAATCCATTCAGCAGTATCACGCAACACAGGAA
TCGCAGAACACCTTGTCCCAGGCTTACTACGTCCAGTCCCACTCACAGCAGCATTCCGTGCCCGTGCAGCAGCTGACTCA
TTTGCAGCCTGGCTGGCNGACCACCGCCCAGTGGCTGGCCGCCGGCGCCGCNNNNNNNNNGCATTCCGGCTTGCCGGCGA
ACAACGTCGTGCAGCAGTACTGCACTTCCGCGACGCCTGACGGTAGTGGCCAAGGCTACGCTACTGGGAACCAAGGCTCC
ATGCCTTGGAACCTACAGTAGCTACGTTACCTTTGTGCGAGTCAGCAAGCATCCGATGTTTTTGGCCCCCTATTCTCCCT
TTGTGTCTACCATGCAGTNCATGTAATTATATATCATGCGAACTGCACCACCCAGATAAAAATACAAGTGTTACTACTAG
CCGCTTAGGTAGTTGCTGGTTGTNTGCAAATGGTGTNNCAGNNNACATGTAGNNGCANGAACTTGATGCCATGANCATAT
GCCTGCTAGGCTGCTACTTTGGTTTTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis