Browse Element(s) Details


Os.24756.2.S1_x_at

Description gb:AK060281.1
DB_XREF= gi:32970299
TID=Os.24756.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023097O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-B06, full insert sequence.
FL= gb:AK060281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4755011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47480OsAffx.4114.1.S1_at11/114+27951506..27955183hypothetical protein
LOC_Os04g47480OsAffx.24732.1.S1_x_at1/114+27951506..27955183hypothetical protein
LOC_Os04g47490OsAffx.14313.1.S1_at11/114+27958254..27958680hypothetical protein
LOC_Os04g47500OsAffx.9930.1.S1_at6/114+27959638..27960999transposon protein, putative, Pong sub-class
LOC_Os04g47510OsAffx.26503.1.S1_at11/114+27961599..27961955hypothetical protein
LOC_Os04g47520OsAffx.14314.1.S1_x_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_s_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.1.A1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47530OsAffx.4115.1.S1_at11/114+27973372..27976315expressed protein
LOC_Os04g47550Os.24756.1.S1_at11/114+27978515..27981013expressed protein
LOC_Os04g47550Os.24756.2.S1_x_at11/114+27978515..27981013expressed protein
LOC_Os04g47560NANA4+27985496..27991883retrotransposon protein, putative, unclassified
LOC_Os04g47570OsAffx.14316.1.S1_at10/114+27994114..27999115Protein kinase domain containing protein
LOC_Os04g47570OsAffx.15844.1.S1_at1/114+27994114..27999115Protein kinase domain containing protein
LOC_Os04g47580Os.9246.1.S1_at11/114+27999622..28002577G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os04g47590Os.28054.1.S1_at11/114+28005406..28021730Niemann-Pick C type protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24756.2.S1_x_at--735--571Chr04:27979457..27979481 (25 bp)
ATCCTTGTTCAAGTGGCCATTGGTC
LOC_Os04g47550
Os.24756.2.S1_x_at--866--11Chr04:27979475..27979496 (22 bp)
ATTGGTCAGACCTCCCAGTTGAAAA
LOC_Os04g47550
Os.24756.2.S1_x_at--101--1671Chr04:27980424..27980448 (25 bp)
AGCCCTTCGGGAGCATGCGATATTT
LOC_Os04g47550
Os.24756.2.S1_x_at--253--2271Chr04:27980457..27980481 (25 bp)
AAATCATTCGGTGTGTTTGCCCATC
LOC_Os04g47550
Os.24756.2.S1_x_at--1035--1351Chr04:27980493..27980517 (25 bp)
AGAGCTTAGGTCCAGCTGTGTCTAC
LOC_Os04g47550
Os.24756.2.S1_x_at--926--1871Chr04:27980540..27980564 (25 bp)
ACGATGATCATTTTCCTTCTAGGCG
LOC_Os04g47550
Os.24756.2.S1_x_at--318--10771Chr04:27980612..27980636 (25 bp)
TTGAGGATGTTTTCCCTTCTTGTGA
LOC_Os04g47550
Os.24756.2.S1_x_at--179--8911Chr04:27980634..27980658 (25 bp)
TGAGCGTGGGTATTCGACCTATCTC
LOC_Os04g47550
Os.24756.2.S1_x_at--343--1751Chr04:27980650..27980674 (25 bp)
ACCTATCTCCCTATTTCTGAAGTTT
LOC_Os04g47550
Os.24756.2.S1_x_at--484--72Chr04:27980751..27980775 (25 bp)
ATTGCTGCCGTGTGCTTACATTGAC
LOC_Os04g47550
Os.24756.2.S1_x_at--23--10291Chr04:27980815..27980839 (25 bp)
TTTGCCGCCTTTTAGAAGTTCGCTG
LOC_Os04g47550
Target Sequence 
ATCCTTGTTCAAGTGGCCATTGGTCAGACCTCCCAGTTGAAAATAACAGATTGGTAAGATTAAGATCTGCGGTTGCAGCA
GCAGCCCTTCGGGAGCATGCGATATTTGTTGGACAAAATCATTCGGTGTGTTTGCCCATCAGGGATTTTCCAGAGCTTAG
GTCCAGCTGTGTCTACTTCACAACACCTTGCTTGTGTAACGATGATCATTTTCCTTCTAGGCGGGAAGGTTGGAAAGGTG
TAGGGATTTACGACTTGCAAAATCAGATATTTGAGGATGTTTTCCCTTCTTGTGAGCGTGGGTATTCGACCTATCTCCCT
ATTTCTGAAGTTTGGATCACCCCCAGCCCCGGCCTTTGAAAGAGTACCACATAGCCTTTTAGAAGTTTGCTGGAAGCGTG
GAACGGATCATTGCTGCCGTGTGCTTACATTGACTTGTACTTAACTTATCAATGTTATTGTTATATATATTGTTTTGCCG
CCTTTTAGAAGTTCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24756.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis