Browse Element(s) Details


OsAffx.26503.1.S1_at

Description tigr:9632.m04588
TID=OsAffx.26503.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4751011/11hypothetical protein
LOC_Os04g348007/11hypothetical protein
LOC_Os07g276706/11WRKY DNA binding domain containing protein
LOC_Os01g113301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47450OsAffx.26501.1.S1_at11/114+27936978..27938033expressed protein
LOC_Os04g47460OsAffx.4113.1.S1_at11/114+27945284..27946050hypothetical protein
LOC_Os04g47470OsAffx.26502.1.S1_at10/114+27947493..27947976hypothetical protein
LOC_Os04g47480OsAffx.4114.1.S1_at11/114+27951506..27955183hypothetical protein
LOC_Os04g47480OsAffx.24732.1.S1_x_at1/114+27951506..27955183hypothetical protein
LOC_Os04g47490OsAffx.14313.1.S1_at11/114+27958254..27958680hypothetical protein
LOC_Os04g47500OsAffx.9930.1.S1_at6/114+27959638..27960999transposon protein, putative, Pong sub-class
LOC_Os04g47510OsAffx.26503.1.S1_at11/114+27961599..27961955hypothetical protein
LOC_Os04g47520OsAffx.14314.1.S1_x_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_s_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.1.A1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47530OsAffx.4115.1.S1_at11/114+27973372..27976315expressed protein
LOC_Os04g47550Os.24756.1.S1_at11/114+27978515..27981013expressed protein
LOC_Os04g47550Os.24756.2.S1_x_at11/114+27978515..27981013expressed protein
LOC_Os04g47560NANA4+27985496..27991883retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26503.1.S1_at--501--1651Chr04:27961709..27961733 (25 bp)
ACCTTTCTGGGGCAGTCTTGACGGA
LOC_Os04g47510
OsAffx.26503.1.S1_at--308--9133Chr04:27961736..27961760 (25 bp)
TGCTGGGAATTCGTCGGTGCTCGCC
LOC_Os04g47510
OsAffx.26503.1.S1_at--863--9431Chr04:27961749..27961773 (25 bp)
TCGGTGCTCGCCGAAGAAGATCCGT
LOC_Os04g47510
OsAffx.26503.1.S1_at--16--5391Chr04:27961761..27961785 (25 bp)
GAAGAAGATCCGTCGTCGCAGCCGT
LOC_Os04g47510
OsAffx.26503.1.S1_at--757--9412Chr04:27961773..27961797 (25 bp)
TCGTCGCAGCCGTGCGGGAATAACA
LOC_Os04g47510
OsAffx.26503.1.S1_at--1039--5073Chr07:16146509..16146533 (25 bp)
GCAGCCGTGCGGGAATAACAAGAAA
LOC_Os07g27670
OsAffx.26503.1.S1_at--232--3093Chr07:16146522..16146546 (25 bp)
AATAACAAGAAAATGCGCGAAGCAA
LOC_Os07g27670
OsAffx.26503.1.S1_at--407--1494Chr07:16146542..16146566 (25 bp)
AGCAAAATTATATCCGCGCCAAAAA
LOC_Os07g27670
OsAffx.26503.1.S1_at--102--8373Chr07:16146580..16146605 (25 bp)
GGCGTGCTCCGGAGTCCCCAGGACT
LOC_Os07g27670
OsAffx.26503.1.S1_at--1069--7634Chr07:16146617..16146641 (25 bp)
GGGAGGATTTGAGGGCCTCCTCACT
LOC_Os07g27670
OsAffx.26503.1.S1_at--1059--5293Chr07:16146622..16146646 (25 bp)
GATTTGAGGGCCTCCTCACTTTGGG
LOC_Os07g27670
Target Sequence 
ACCTTTCTGGGGCAGTCTTGACGGAGGTGCTGGGAATTCGTCGGTGCTCGCCGAAGAAGATCCGTCGTCGCAGCCGTGCG
GGAATAACAAGAAAATGCGCGAAGCAAAATTATATCCGCGCCAAAAAAATGACGATGGGGCGTGCTCCGGAGTCCCCAGG
ACTGGGGCCTTGGGGGGAGGATTTGAGGGCCTCCTCACTTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis