Browse Element(s) Details


OsAffx.4113.1.S1_at

Description tigr:9632.m04583
TID=OsAffx.4113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4746011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47420Os.51085.1.S1_at11/114+27918643..27920807LILLIM08, putative, expressed
LOC_Os04g47430Os.46500.1.S1_at1/114+27923914..27925208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g47440Os.46500.2.S1_at1/114+27925863..27926431hypothetical protein
LOC_Os04g47450OsAffx.26501.1.S1_at11/114+27936978..27938033expressed protein
LOC_Os04g47460OsAffx.4113.1.S1_at11/114+27945284..27946050hypothetical protein
LOC_Os04g47470OsAffx.26502.1.S1_at10/114+27947493..27947976hypothetical protein
LOC_Os04g47480OsAffx.4114.1.S1_at11/114+27951506..27955183hypothetical protein
LOC_Os04g47480OsAffx.24732.1.S1_x_at1/114+27951506..27955183hypothetical protein
LOC_Os04g47490OsAffx.14313.1.S1_at11/114+27958254..27958680hypothetical protein
LOC_Os04g47500OsAffx.9930.1.S1_at6/114+27959638..27960999transposon protein, putative, Pong sub-class
LOC_Os04g47510OsAffx.26503.1.S1_at11/114+27961599..27961955hypothetical protein
LOC_Os04g47520OsAffx.14314.1.S1_x_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_s_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.1.A1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_at11/114+27962133..27966274axi 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4113.1.S1_at--975--9231Chr04:27945830..27946010 (25 bp)
TCCTTGTCCGACCTAAACGGAGGCA
LOC_Os04g47460
OsAffx.4113.1.S1_at--976--2571Chr04:27945815..27945836 (22 bp)
AACGGAGGCATGAGTTTTCTATCAT
LOC_Os04g47460
OsAffx.4113.1.S1_at--252--5571Chr04:27945784..27945808 (25 bp)
GAAAGACCCTACCATGATCGCAGTG
LOC_Os04g47460
OsAffx.4113.1.S1_at--696--8371Chr04:27945755..27945779 (25 bp)
GGCGTAGGGCTTTCAGATCAGCAAT
LOC_Os04g47460
OsAffx.4113.1.S1_at--464--2411Chr04:27945726..27945750 (25 bp)
AAACACATGGCCCTATGCAACTGTC
LOC_Os04g47460
OsAffx.4113.1.S1_at--795--651Chr04:27945712..27945736 (25 bp)
ATGCAACTGTCAATCCAAATGGCCA
LOC_Os04g47460
OsAffx.4113.1.S1_at--205--2291Chr04:27945451..27945720 (25 bp)
AAATGGCCACTTTTTCCTCGACTGA
LOC_Os04g47460
OsAffx.4113.1.S1_at--984--5491Chr04:27945428..27945452 (25 bp)
GAACAAAGTCAATCGTCCAAAGCAA
LOC_Os04g47460
OsAffx.4113.1.S1_at--1005--4571Chr04:27945377..27945401 (25 bp)
GCGAATAAGTTATCTCCAGTTGGGT
LOC_Os04g47460
OsAffx.4113.1.S1_at--1112--3431Chr04:27945361..27945385 (25 bp)
CAGTTGGGTGTTGGGAGCATCATCA
LOC_Os04g47460
OsAffx.4113.1.S1_at--194--7651Chr04:27945349..27945373 (25 bp)
GGGAGCATCATCAACCTAGAAAAAT
LOC_Os04g47460
Target Sequence 
TCCTTGTCCGACCTAAACGGAGGCATGAGTTTTCTATCATGTGGGTGAAAGACCCTACCATGATCGCAGTGAGATGGCGT
AGGGCTTTCAGATCAGCAATTCAAAAACACATGGCCCTATGCAACTGTCAATCCAAATGGCCACTTTTTCCTCGACTGAA
CAAAGTCAATCGTCCAAAGCAACAATGCAGATTTGTGAACTGCAAATGGCGAATAAGTTATCTCCAGTTGGGTGTTGGGA
GCATCATCAACCTAGAAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis