Browse Element(s) Details


Os.27822.2.S1_s_at

Description gb:CB676120
DB_XREF= gi:29679845
DB_XREF=OSJNEe12D07.f
CLONE=OSJNEe12D07
TID=Os.27822.2
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27822 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565129.1 (A.thaliana) putative auxin-independent growth promoter (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4752011/11axi 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47450OsAffx.26501.1.S1_at11/114+27936978..27938033expressed protein
LOC_Os04g47460OsAffx.4113.1.S1_at11/114+27945284..27946050hypothetical protein
LOC_Os04g47470OsAffx.26502.1.S1_at10/114+27947493..27947976hypothetical protein
LOC_Os04g47480OsAffx.4114.1.S1_at11/114+27951506..27955183hypothetical protein
LOC_Os04g47480OsAffx.24732.1.S1_x_at1/114+27951506..27955183hypothetical protein
LOC_Os04g47490OsAffx.14313.1.S1_at11/114+27958254..27958680hypothetical protein
LOC_Os04g47500OsAffx.9930.1.S1_at6/114+27959638..27960999transposon protein, putative, Pong sub-class
LOC_Os04g47510OsAffx.26503.1.S1_at11/114+27961599..27961955hypothetical protein
LOC_Os04g47520OsAffx.14314.1.S1_x_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_s_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.1.A1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47530OsAffx.4115.1.S1_at11/114+27973372..27976315expressed protein
LOC_Os04g47550Os.24756.1.S1_at11/114+27978515..27981013expressed protein
LOC_Os04g47550Os.24756.2.S1_x_at11/114+27978515..27981013expressed protein
LOC_Os04g47560NANA4+27985496..27991883retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27822.2.S1_s_at--1087--7091Chr04:27966015..27966039 (25 bp)
GTCACCAGCACCACGGCAGGTGGGT
LOC_Os04g47520
Os.27822.2.S1_s_at--58--4411Chr04:27965871..27965895 (25 bp)
GCCACCGTGTTGTGCGGCGACCGAA
LOC_Os04g47520
Os.27822.2.S1_s_at--105--5911Chr04:27965507..27965531 (25 bp)
GAGCTCTGGGCGTCGAAACTGGCCA
LOC_Os04g47520
Os.27822.2.S1_s_at--1106--2511Chr04:27965480..27965504 (25 bp)
AACTTCTTCGGCTGCAGCAACGCGA
LOC_Os04g47520
Os.27822.2.S1_s_at--619--5851Chr04:27965331..27965481 (25 bp)
GACCAAGGCGTTCGCCGATGCCAAG
LOC_Os04g47520
Os.27822.2.S1_s_at--387--2951Chr04:27965309..27965333 (25 bp)
AAGGCCGTCACGGAGCCGAATCGGT
LOC_Os04g47520
Os.27822.2.S1_s_at--526--4511Chr04:27965295..27965319 (25 bp)
GCCGAATCGGTATCTGATGATCGCA
LOC_Os04g47520
Os.27822.2.S1_s_at--241--6911Chr04:27965286..27965310 (25 bp)
GTATCTGATGATCGCAACGAGCGGC
LOC_Os04g47520
Os.27822.2.S1_s_at--183--5431Chr04:27965251..27965280 (25 bp)
GAACCAGCAGCGAACAGGGATCATA
LOC_Os04g47520
Os.27822.2.S1_s_at--483--10791Chr04:27964551..27964575 (25 bp)
TTGTTGCAGCCCGTATTCTGAATGC
LOC_Os04g47520
Os.27822.2.S1_s_at--658--2471Chr04:27964526..27964550 (25 bp)
AACACTTGTCATTCCCAACCTGGAT
LOC_Os04g47520
Target Sequence 
GTCACCAGCACCACGGCAGGTGGGTGGTGCCCGCGGTGGCGCCGGCCGCGGCGGCGTTCACGGCGGCGGGACTGCTGCTC
GTCGTCGTCGCTTTCCACTGCTTCCTGTCGCCGCCGCTCGGCGGCGGCGGCGGCGGGGGTGGCGGCCACCGTGTTGTGCG
GCGACCGAACCCGCCGTTCCTGTTGAACAAGCCGAGCGAGCTGCGCCGAAATGTAGTTGGCACCGTCGATTTTGCCGTTC
CTAGCGGCGGGAGCAAGCTGGGNGAAGAGCTCTGGGCGTCGAAACTGGCCAGCAACTTCTTCGGCTGCAGCAACGCGACC
AAGGCGTTCGCCGATGCCAAGGCCGTCACGGAGCCGAATCGGTATCTGATGATCGCAACGAGCGGCGGCCTGAACCAGCA
GCGAACAGGGATCATAGATGCTGTTGTTGCAGCCCGTATTCTGAATGCAACACTTGTCATTCCCAACCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27822.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis