Browse Element(s) Details


Os.27822.1.A1_at

Description gb:CA763943
DB_XREF= gi:27545746
DB_XREF=AF53-Rpf_01C_J07_T7.ab1
CLONE=C0000223
TID=Os.27822.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27822 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565129.1 (A.thaliana) putative auxin-independent growth promoter (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4752011/11axi 1, putative, expressed
LOC_Os02g207201/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47450OsAffx.26501.1.S1_at11/114+27936978..27938033expressed protein
LOC_Os04g47460OsAffx.4113.1.S1_at11/114+27945284..27946050hypothetical protein
LOC_Os04g47470OsAffx.26502.1.S1_at10/114+27947493..27947976hypothetical protein
LOC_Os04g47480OsAffx.4114.1.S1_at11/114+27951506..27955183hypothetical protein
LOC_Os04g47480OsAffx.24732.1.S1_x_at1/114+27951506..27955183hypothetical protein
LOC_Os04g47490OsAffx.14313.1.S1_at11/114+27958254..27958680hypothetical protein
LOC_Os04g47500OsAffx.9930.1.S1_at6/114+27959638..27960999transposon protein, putative, Pong sub-class
LOC_Os04g47510OsAffx.26503.1.S1_at11/114+27961599..27961955hypothetical protein
LOC_Os04g47520OsAffx.14314.1.S1_x_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_s_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.1.A1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47530OsAffx.4115.1.S1_at11/114+27973372..27976315expressed protein
LOC_Os04g47550Os.24756.1.S1_at11/114+27978515..27981013expressed protein
LOC_Os04g47550Os.24756.2.S1_x_at11/114+27978515..27981013expressed protein
LOC_Os04g47560NANA4+27985496..27991883retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27822.1.A1_at--610--5951Chr04:27962466..27962764 (25 bp)
GAGAACACAGAAACAGACCTTCGGT
LOC_Os04g47520
Os.27822.1.A1_at--1150--2131Chr04:27962454..27962478 (25 bp)
ACAGACCTTCGGTATGCGCAAAGAA
LOC_Os04g47520
Os.27822.1.A1_at--514--1131Chr04:27962421..27962445 (25 bp)
AGTGCTGTGTTAGTTTCCTGCGAAT
LOC_Os04g47520
Os.27822.1.A1_at--1003--6831Chr04:27962409..27962433 (25 bp)
GTTTCCTGCGAATGCTGAGAGGCAA
LOC_Os04g47520
Os.27822.1.A1_at--1107--9891Chr04:27962361..27962385 (25 bp)
TACTCTTTCAAATATTTTACCTGTG
LOC_Os04g47520
Os.27822.1.A1_at--433--9971Chr04:27962344..27962368 (25 bp)
TACCTGTGTACCATAAATAGATGCT
LOC_Os04g47520
Os.27822.1.A1_at--158--10791Chr04:27962297..27962321 (25 bp)
TTGTCCTTTGGTATGCGTTTTCTTA
LOC_Os04g47520
Os.27822.1.A1_at--333--10111Chr04:27962286..27962310 (25 bp)
TATGCGTTTTCTTATTACCCTTGTT
LOC_Os04g47520
Os.27822.1.A1_at--1123--10371Chr04:27962261..27962285 (25 bp)
TTTTCTTTCTTTCAACAAGTGGATG
LOC_Os04g47520
Os.27822.1.A1_at--980--5592Chr02:12214982..12215001 (20 bp)
GAAATTTGTACATAGCATGACACCT
LOC_Os02g20720
Os.27822.1.A1_at--472--7991Chr04:27962163..27962187 (25 bp)
GGAGGAACTTTACATATATTTTCCA
LOC_Os04g47520
Target Sequence 
GAGAACACAGAAACAGACCTTCGGTATGCGCAAAGAAAATTGTACAGTGCTGTGTTAGTTTCCTGCGAATGCTGAGAGGC
AAAGAAGACTTTTTAGTTCCTTTTTTACTCTTTCAAATATTTTACCTGTGTACCATAAATAGATGCTATAGTATTATTTT
GGNTTTTTTTTTGTCCTTTGGTATGCGTTTTCTTATTACCCTTGTTTTTTCTTTCTTTCAACAAGTGGATGTAACTTTTA
GGTTTTTTGCTNCCGTGAAATTTGTACATAGCATGACACCTAAATGANNGGGAAAAAAAGAAAAGGAGGAACTTTACATA
TATTTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27822.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis