Browse Element(s) Details


Os.51085.1.S1_at

Description gb:AK060598.1
DB_XREF= gi:32970616
TID=Os.51085.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51085 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G11, full insert sequence.
FL= gb:AK060598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4742011/11LILLIM08, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47360Os.52261.1.S1_at11/114+27889666..27894512Prolyl endopeptidase, putative, expressed
LOC_Os04g47370OsAffx.4111.1.S1_at11/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_at10/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_x_at10/114+27895775..27898428expressed protein
LOC_Os04g47380Os.24554.1.A1_at11/114+27898899..27903554expressed protein
LOC_Os04g47390OsAffx.4112.1.S1_at11/114+27904538..27906003GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g47400Os.53095.1.S1_at10/114+27907923..27911197Pollen-specific protein NTP303 precursor, putative, expressed
LOC_Os04g47410Os.17565.1.S1_at11/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47410Os.31630.1.S1_x_at1/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47420Os.51085.1.S1_at11/114+27918643..27920807LILLIM08, putative, expressed
LOC_Os04g47430Os.46500.1.S1_at1/114+27923914..27925208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g47440Os.46500.2.S1_at1/114+27925863..27926431hypothetical protein
LOC_Os04g47450OsAffx.26501.1.S1_at11/114+27936978..27938033expressed protein
LOC_Os04g47460OsAffx.4113.1.S1_at11/114+27945284..27946050hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51085.1.S1_at--1022--3811Chr04:27919172..27919196 (25 bp)
CTGCTGGTGATCGTCAACTGCCTGA
LOC_Os04g47420
Os.51085.1.S1_at--640--6891Chr04:27919143..27919167 (25 bp)
GTATCAGATCTACGCGATGCCGGTG
LOC_Os04g47420
Os.51085.1.S1_at--46--7431Chr04:27919121..27919145 (25 bp)
GTGTTCGACAACATGGAGACCGGGT
LOC_Os04g47420
Os.51085.1.S1_at--857--5991Chr04:27919106..27919130 (25 bp)
GAGACCGGGTACGTCCACAAGAAGA
LOC_Os04g47420
Os.51085.1.S1_at--420--4251Chr04:27918938..27918962 (25 bp)
CCGTGCTTCATGTGGGTGGCGATCA
LOC_Os04g47420
Os.51085.1.S1_at--87--2891Chr04:27918902..27918926 (25 bp)
AAGGGCACCGCCATGTGGTACACCA
LOC_Os04g47420
Os.51085.1.S1_at--1079--2651Chr04:27918864..27918888 (25 bp)
AAGCCTTGGCATGGGTCTGAGCTTC
LOC_Os04g47420
Os.51085.1.S1_at--165--5931Chr04:27918846..27918870 (25 bp)
GAGCTTCGTGCTCATAGTTGGGAAT
LOC_Os04g47420
Os.51085.1.S1_at--651--2951Chr04:27918802..27918826 (25 bp)
AAGGCCTGCATGTGAAGTTCTTCAA
LOC_Os04g47420
Os.51085.1.S1_at--926--9711Chr04:27918781..27918805 (25 bp)
TCAAGCCTGCGGATTTCCAGTGAGA
LOC_Os04g47420
Os.51085.1.S1_at--377--6551Chr04:27918700..27918724 (25 bp)
GATTTTGTCTTTTCTCAGCACAACT
LOC_Os04g47420
Target Sequence 
CTGCTGGTGATCGTCAACTGCCTGACCACGTATCAGATCTACGCGATGCCGGTGTTCGACAACATGGAGACCGGGTACGT
CCACAAGAAGAACCGGCCGTGCCCGTGGTGGATGCGCGCCGGCTTCCGCGCCCTCTTCGGCGCCATCAACCTCCTCATCG
CCGTCGCGCTGCCGTTCCTGTCGGAACTCGCCGGCCTCCTCGGGGGGATCTCGCTGCCGGTCACGCTGGCGTACCCGTGC
TTCATGTGGGTGGCGATCATGAGGCCGGCCAAGGGCACCGCCATGTGGTACACCAACTGGGGGCTGGGAAGCCTTGGCAT
GGGTCTGAGCTTCGTGCTCATAGTTGGGAATCTCTGGGGCCTTGTGGAGAAAGGCCTGCATGTGAAGTTCTTCAAGCCTG
CGGATTTCCAGTGAGAAAACTGCAAATGCAGCAAAACCTGTGAAACCGACGGAAAACGCAATGTAGTGTGGTGATTTTGT
CTTTTCTCAGCACAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis