Browse Element(s) Details


OsAffx.4111.1.S1_at

Description tigr:9632.m04574
TID=OsAffx.4111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4737011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47320OsAffx.26499.1.S1_at11/114+27872062..27875526Mechanosensitive ion channel family protein, expressed
LOC_Os04g47330Os.55318.1.S1_at11/114+27877256..27878536Rho-GTPase-activating protein, putative, expressed
LOC_Os04g47350NANA4+27886625..27888644retrotransposon protein, putative, unclassified
LOC_Os04g47360Os.52261.1.S1_at11/114+27889666..27894512Prolyl endopeptidase, putative, expressed
LOC_Os04g47370OsAffx.4111.1.S1_at11/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_at10/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_x_at10/114+27895775..27898428expressed protein
LOC_Os04g47380Os.24554.1.A1_at11/114+27898899..27903554expressed protein
LOC_Os04g47390OsAffx.4112.1.S1_at11/114+27904538..27906003GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g47400Os.53095.1.S1_at10/114+27907923..27911197Pollen-specific protein NTP303 precursor, putative, expressed
LOC_Os04g47410Os.17565.1.S1_at11/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47410Os.31630.1.S1_x_at1/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47420Os.51085.1.S1_at11/114+27918643..27920807LILLIM08, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4111.1.S1_at--136--10491Chr04:27897052..27897230 (25 bp)
TTAACCAGGGTTACGATTGTCAATT
LOC_Os04g47370
OsAffx.4111.1.S1_at--1042--8732Chr04:27897223..27897247 (25 bp)
TGTCAATTGTGGTGGTCTACTCGAA
LOC_Os04g47370
OsAffx.4111.1.S1_at--248--8671Chr04:27897230..27897254 (25 bp)
TGTGGTGGTCTACTCGAATGTACGA
LOC_Os04g47370
OsAffx.4111.1.S1_at--845--5271Chr04:27897245..27897269 (25 bp)
GAATGTACGAAGAATGGATGCAATA
LOC_Os04g47370
OsAffx.4111.1.S1_at--856--9011Chr04:27897263..27897287 (25 bp)
TGCAATATGGGTATCGCATTAAAGT
LOC_Os04g47370
OsAffx.4111.1.S1_at--498--2731Chr04:27897435..27897458 (24 bp)
AAGAACATGGGCAGGCAACAACCAA
LOC_Os04g47370
OsAffx.4111.1.S1_at--901--5131Chr04:27897448..27897472 (25 bp)
GCAACAACCAAGGAAAGAGGGACCT
LOC_Os04g47370
OsAffx.4111.1.S1_at--900--2911Chr04:27897492..27897516 (25 bp)
AAGGCAAAGTGTTGGTGAGCAGCAT
LOC_Os04g47370
OsAffx.4111.1.S1_at--536--8611Chr04:27897504..27897528 (25 bp)
TGGTGAGCAGCATGTCCATGCATGA
LOC_Os04g47370
OsAffx.4111.1.S1_at--819--3392Chr04:27897511..27897535 (25 bp)
CAGCATGTCCATGCATGAGGAGAAG
LOC_Os04g47370
OsAffx.4111.1.S1_at--230--5191Chr04:27897553..27898028 (25 bp)
GAATTGTCATGGATGGCTGCAGAGT
LOC_Os04g47370
Target Sequence 
TTAACCAGGGTTACGATTGTCAATTGTGGTGGTCTACTCGAATGTACGAAGAATGGATGCAATATGGGTATCGCATTAAA
GTTAAGAACATGGGCAGGCAACAACCAAGGAAAGAGGGACCTAGGGCAGGCATGTGTGGTGAAGGCAAAGTGTTGGTGAG
CAGCATGTCCATGCATGAGGAGAAGAAGAGCGGCTCCGGGGTGAATTGTCATGGATGGCTGCAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis