Browse Element(s) Details


Os.24554.1.A1_at

Description gb:AK067397.1
DB_XREF= gi:32977415
TID=Os.24554.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105G06, full insert sequence.
FL= gb:AK067397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4738011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47320OsAffx.26499.1.S1_at11/114+27872062..27875526Mechanosensitive ion channel family protein, expressed
LOC_Os04g47330Os.55318.1.S1_at11/114+27877256..27878536Rho-GTPase-activating protein, putative, expressed
LOC_Os04g47350NANA4+27886625..27888644retrotransposon protein, putative, unclassified
LOC_Os04g47360Os.52261.1.S1_at11/114+27889666..27894512Prolyl endopeptidase, putative, expressed
LOC_Os04g47370OsAffx.4111.1.S1_at11/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_at10/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_x_at10/114+27895775..27898428expressed protein
LOC_Os04g47380Os.24554.1.A1_at11/114+27898899..27903554expressed protein
LOC_Os04g47390OsAffx.4112.1.S1_at11/114+27904538..27906003GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g47400Os.53095.1.S1_at10/114+27907923..27911197Pollen-specific protein NTP303 precursor, putative, expressed
LOC_Os04g47410Os.17565.1.S1_at11/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47410Os.31630.1.S1_x_at1/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47420Os.51085.1.S1_at11/114+27918643..27920807LILLIM08, putative, expressed
LOC_Os04g47430Os.46500.1.S1_at1/114+27923914..27925208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g47440Os.46500.2.S1_at1/114+27925863..27926431hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24554.1.A1_at--785--6091Chr04:27899943..27899967 (25 bp)
GAGTCTTACATCGTAGAAGTCCATT
LOC_Os04g47380
Os.24554.1.A1_at--547--4671Chr04:27899793..27899817 (25 bp)
GCGGGTCAAACTATTACCTGTTGCA
LOC_Os04g47380
Os.24554.1.A1_at--274--9051Chr04:27899530..27899796 (25 bp)
TGCATCTATGCACTCAAGCTGGGAC
LOC_Os04g47380
Os.24554.1.A1_at--6--10871Chr04:27899299..27899500 (25 bp)
TTGGACGCACACACCCAAGTGTTGG
LOC_Os04g47380
Os.24554.1.A1_at--1143--8471Chr04:27899277..27899301 (25 bp)
TGGCGTCATGTTAAGCTGCAGAGCT
LOC_Os04g47380
Os.24554.1.A1_at--1020--6471Chr04:27899250..27899274 (25 bp)
GATACTGCAACTCGATGTCACTGAC
LOC_Os04g47380
Os.24554.1.A1_at--190--5771Chr04:27899228..27899252 (25 bp)
GACGTTAAGATGGACTTCCTGCAGT
LOC_Os04g47380
Os.24554.1.A1_at--10--6911Chr04:27899184..27899208 (25 bp)
GTATCATGCTCAGTTCGTATCATTG
LOC_Os04g47380
Os.24554.1.A1_at--248--7011Chr04:27899136..27899160 (25 bp)
GTACTGATGAAATGCGCAGCCTGCA
LOC_Os04g47380
Os.24554.1.A1_at--252--3673Chr11:6663530..6663554 (24 bp)
CTTAGGGCCTGTTTAGGAAGCTTAT
NONE
Os.24554.1.A1_at--1068--5391Chr04:27898934..27898958 (25 bp)
GAAGCTTATAGCTGCTCCAATGTTA
LOC_Os04g47380
Target Sequence 
GAGTCTTACATCGTAGAAGTCCATTAGAGAGAAAACGGATTATACACTGGATGGAGATTGAAAAAATTTCTGGCGGGTCA
AACTATTACCTGTTGCATCTATGCACTCAAGCTGGGACNTACATAAAGGAGTTTGTGCACGGAGNTCTTGGACGCACACA
CCCAAGTGTTGGCGTCATGTTAAGCTGCAGAGCTGAGATACTGCAACTCGATGTCACTGACGTTAAGATGGACTTCCTGC
AGTAATANGCTATTGTCATATNGTATCATGCTCAGTTCGTATCATTGGTTATTGGTGTTGTACACTATCTGTACTGATGA
AATGCGCAGCCTGCAGANGACCNCAAGGCAAGTTCAGAAAATATGTCATTTTACTATAGTATAACCTTNTGATGAGAGGC
TATTTGAGAAATTGAGCTCAGTNTGCTCCAATGTCAACTTACAGCTATGTATTATGAGCCNCAGTTTTGCCAAAAAAAAN
ANNATGCTTATACTGGCTTAGGGCCTGTTTAGGAAGCTTATAGCTGCTCCAATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24554.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis