Browse Element(s) Details


OsAffx.4112.1.S1_at

Description tigr:9632.m04576
TID=OsAffx.4112.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GDSL-like LipaseAcylhydrolase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4739011/11GDSL-like Lipase/Acylhydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47350NANA4+27886625..27888644retrotransposon protein, putative, unclassified
LOC_Os04g47360Os.52261.1.S1_at11/114+27889666..27894512Prolyl endopeptidase, putative, expressed
LOC_Os04g47370OsAffx.4111.1.S1_at11/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_at10/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_x_at10/114+27895775..27898428expressed protein
LOC_Os04g47380Os.24554.1.A1_at11/114+27898899..27903554expressed protein
LOC_Os04g47390OsAffx.4112.1.S1_at11/114+27904538..27906003GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g47400Os.53095.1.S1_at10/114+27907923..27911197Pollen-specific protein NTP303 precursor, putative, expressed
LOC_Os04g47410Os.17565.1.S1_at11/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47410Os.31630.1.S1_x_at1/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47420Os.51085.1.S1_at11/114+27918643..27920807LILLIM08, putative, expressed
LOC_Os04g47430Os.46500.1.S1_at1/114+27923914..27925208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g47440Os.46500.2.S1_at1/114+27925863..27926431hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4112.1.S1_at--835--5151Chr04:27905274..27905298 (25 bp)
GCAACGACCTATTCGAGTACACCGA
LOC_Os04g47390
OsAffx.4112.1.S1_at--206--2591Chr04:27905227..27905251 (25 bp)
AACGACACCGAATTCTTGCAGAGCC
LOC_Os04g47390
OsAffx.4112.1.S1_at--779--5211Chr04:27905218..27905242 (25 bp)
GAATTCTTGCAGAGCCTCGTCGCCT
LOC_Os04g47390
OsAffx.4112.1.S1_at--204--9851Chr04:27905104..27905215 (25 bp)
TACAAGGGCCACCTCAAGGACCTGT
LOC_Os04g47390
OsAffx.4112.1.S1_at--166--1651Chr04:27905094..27905205 (25 bp)
ACCTCAAGGACCTGTACGGTGCCGG
LOC_Os04g47390
OsAffx.4112.1.S1_at--531--4051Chr04:27905067..27905091 (25 bp)
CGAGGAAATTCAGCGTGGTGAGCCC
LOC_Os04g47390
OsAffx.4112.1.S1_at--587--9491Chr04:27904950..27904974 (25 bp)
TCTCCAGGCAGCTGTACCCGATGCT
LOC_Os04g47390
OsAffx.4112.1.S1_at--22--6991Chr04:27904937..27904961 (25 bp)
GTACCCGATGCTGGGCTCGATGCTG
LOC_Os04g47390
OsAffx.4112.1.S1_at--576--9971Chr04:27904740..27904848 (25 bp)
TACCTGGCGCGAATTTTACGGTGCT
LOC_Os04g47390
OsAffx.4112.1.S1_at--955--10371Chr04:27904727..27904751 (25 bp)
TTTTACGGTGCTGGACAGGCCGTGC
LOC_Os04g47390
OsAffx.4112.1.S1_at--470--7651Chr04:27904648..27904672 (25 bp)
GGGAGTTACCTCTTCTGGGACAACT
LOC_Os04g47390
Target Sequence 
GCAACGACCTATTCGAGTACACCGACTTCCCGTCGAACACCACCCGCAACGACACCGAATTCTTGCAGAGCCTCGTCGCC
TCCTACAAGGGCCACCTCAAGGACCTGTACGGTGCCGGGGCGAGGAAATTCAGCGTGGTGAGCCCGTCGCTGGTGGGGTG
CTGCCCGTCGCAGAGGGCGGTCGCGCACGACACGAACGACCTCGACTTCCACGGCTGCTCCCGCGCGGCGAACGGCCTCT
CCAGGCAGCTGTACCCGATGCTGGGCTCGATGCTGCGCGGCCTCGCTGCCGACCTGCCCGGCATGCACTACTCCCTCGGC
GACTCGGTCGGCATGGCCGAGCTCGTCCTCAACGGCACGGTCCTACCTGGCGCGAATTTTACGGTGCTGGACAGGCCGTG
CTGCGGCGGCGGCGTTGGCGGGTGCAACGGGACGGCGCCGCTGTGCCTGGATCGGGGGAGTTACCTCTTCTGGGACAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis