Browse Element(s) Details


Os.52724.1.S1_x_at

Description gb:AK068927.1
DB_XREF= gi:32978951
TID=Os.52724.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170J12, full insert sequence.
FL= gb:AK068927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4737010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47320OsAffx.26499.1.S1_at11/114+27872062..27875526Mechanosensitive ion channel family protein, expressed
LOC_Os04g47330Os.55318.1.S1_at11/114+27877256..27878536Rho-GTPase-activating protein, putative, expressed
LOC_Os04g47350NANA4+27886625..27888644retrotransposon protein, putative, unclassified
LOC_Os04g47360Os.52261.1.S1_at11/114+27889666..27894512Prolyl endopeptidase, putative, expressed
LOC_Os04g47370OsAffx.4111.1.S1_at11/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_at10/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_x_at10/114+27895775..27898428expressed protein
LOC_Os04g47380Os.24554.1.A1_at11/114+27898899..27903554expressed protein
LOC_Os04g47390OsAffx.4112.1.S1_at11/114+27904538..27906003GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g47400Os.53095.1.S1_at10/114+27907923..27911197Pollen-specific protein NTP303 precursor, putative, expressed
LOC_Os04g47410Os.17565.1.S1_at11/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47410Os.31630.1.S1_x_at1/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47420Os.51085.1.S1_at11/114+27918643..27920807LILLIM08, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52724.1.S1_x_at--684--2411Chr04:27896310..27896334 (25 bp)
AACAGGGACGACTCCATCATCGAGG
LOC_Os04g47370
Os.52724.1.S1_x_at--23--4151Chr04:27896359..27896383 (25 bp)
CGCGGATGTCGCTGGTTGACTCAGA
LOC_Os04g47370
Os.52724.1.S1_x_at--794--8911Chr04:27896411..27896435 (25 bp)
TGAGCGTCGCCTGAAGGCATCATTC
LOC_Os04g47370
Os.52724.1.S1_x_at--991--2651Chr04:27896979..27897003 (25 bp)
AAGCCAGGCCTAACACTGAATCAGT
LOC_Os04g47370
Os.52724.1.S1_x_at--2--3771NONE
CTCTTAACCAGGCTGCAGAGTGATG
NONE
Os.52724.1.S1_x_at--1104--6111Chr04:27898025..27898049 (25 bp)
GAGTGATGATGCATTCCTGCTGAAT
LOC_Os04g47370
Os.52724.1.S1_x_at--463--8051Chr04:27898208..27898232 (25 bp)
GGAGATGATCAGCTTCTCGGCTAAT
LOC_Os04g47370
Os.52724.1.S1_x_at--485--411Chr04:27898257..27898281 (25 bp)
ATCATGTGAGCTCGTTTTTGTTAGA
LOC_Os04g47370
Os.52724.1.S1_x_at--842--10031Chr04:27898278..27898302 (25 bp)
TAGAGATTTTCTTCTGGTTCCTGTT
LOC_Os04g47370
Os.52724.1.S1_x_at--70--7911Chr04:27898293..27898317 (25 bp)
GGTTCCTGTTGTGCGTAATGTGGTC
LOC_Os04g47370
Os.52724.1.S1_x_at--1123--7591Chr04:27898320..27898344 (25 bp)
GGGCACGTTCACTTGAATTTTAACG
LOC_Os04g47370
Target Sequence 
AACAGGGACGACTCCATCATCGAGGCGAGGTCGGTCGACGAGGCCATCGCGCGGATGTCGCTGGTTGACTCAGAGGGAGC
CTTGCCCGCCGACAAGCACCCTGAGCGTCGCCTGAAGGCATCATTCAAGGCATTTGAAGAAGCAGAACTCCCTAAGTTGA
AGGAAGAAAAGCCAGGCCTAACACTGAATCAGTACAAAGACATGATATGGAAGCTATGGAAGAAGTCTCCAGACAACCCT
CTTAACCAGGCTGCAGAGTGATGATGCATTCCTGCTGAATTGTAGAATTTCCAAGACTTCCAAATGGGTCAGAACTTCAT
CAGATGCTCATGGACTGAATGTGTGGGAGATGATCAGCTTCTCGGCTAATAATTTACAAAGTGATGCAGTATATATCATG
TGAGCTCGTTTTTGTTAGAGATTTTCTTCTGGTTCCTGTTGTGCGTAATGTGGTCGGGGGCACGTTCACTTGAATTTTAA
CG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52724.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis