Browse Element(s) Details


Os.53095.1.S1_at

Description gb:AK070790.1
DB_XREF= gi:32980813
TID=Os.53095.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023067H20, full insert sequence.
FL= gb:AK070790.1 gb:AK071517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4740010/11Pollen-specific protein NTP303 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47350NANA4+27886625..27888644retrotransposon protein, putative, unclassified
LOC_Os04g47360Os.52261.1.S1_at11/114+27889666..27894512Prolyl endopeptidase, putative, expressed
LOC_Os04g47370OsAffx.4111.1.S1_at11/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_at10/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_x_at10/114+27895775..27898428expressed protein
LOC_Os04g47380Os.24554.1.A1_at11/114+27898899..27903554expressed protein
LOC_Os04g47390OsAffx.4112.1.S1_at11/114+27904538..27906003GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g47400Os.53095.1.S1_at10/114+27907923..27911197Pollen-specific protein NTP303 precursor, putative, expressed
LOC_Os04g47410Os.17565.1.S1_at11/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47410Os.31630.1.S1_x_at1/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47420Os.51085.1.S1_at11/114+27918643..27920807LILLIM08, putative, expressed
LOC_Os04g47430Os.46500.1.S1_at1/114+27923914..27925208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g47440Os.46500.2.S1_at1/114+27925863..27926431hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53095.1.S1_at--58--5751Chr04:27908689..27908713 (25 bp)
GACGGCTACAGCTTGTTCGTAGTTG
LOC_Os04g47400
Os.53095.1.S1_at--238--4591Chr04:27908313..27908337 (25 bp)
GCGCAGGTATCAGGGCCAGCAGTTC
LOC_Os04g47400
Os.53095.1.S1_at--904--2611Chr04:27908184..27908208 (25 bp)
AACCCTGTCGCGGTACTAGTTGACA
LOC_Os04g47400
Os.53095.1.S1_at--543--3711Chr04:27908169..27908193 (25 bp)
CTAGTTGACAAACCGGCTGGTGCTT
LOC_Os04g47400
Os.53095.1.S1_at--248--8351Chr04:27908155..27908179 (25 bp)
GGCTGGTGCTTGTCAACGACCCTAA
LOC_Os04g47400
Os.53095.1.S1_at--720--6071Chr04:27908120..27908143 (24 bp)
GAGTTACTCGGCCATGACAAGTTTT
LOC_Os04g47400
Os.53095.1.S1_at--442--6811Chr04:27908058..27908082 (25 bp)
GTTTTACTCGGCCATATCACAAGTT
LOC_Os04g47400
Os.53095.1.S1_at--770--7731Chr04:27907966..27907990 (25 bp)
GGTGGGACCAAAGTGTAGCCTATAT
LOC_Os04g47400
Os.53095.1.S1_at--574--9991Chr04:27907951..27907975 (25 bp)
TAGCCTATATGCCTTTTCTTACTCG
LOC_Os04g47400
Os.53095.1.S1_at--164--10331Chr04:27907937..27907961 (25 bp)
TTTCTTACTCGCCAATGCACATTGC
LOC_Os04g47400
Os.53095.1.S1_at--679--651Chr04:27907923..27907947 (25 bp)
ATGCACATTGCCAGGTTTAATTTGC
NONE
Target Sequence 
GACGGCTACAGCTTGTTCGTAGTTGGGATGGACAGGGGAGTGTGGAGCGAGCAGAGCAGGAAGAGCTACAACCTCGTCGA
CGCAGTCTCCCGGTGCACGGTTCAGGTGTACCCGAGGGCGTGGACGGCGGTGTTGGTGGCGCTGGACAATGTGGGGATGT
GGAACCTCAGGTCGGAGGACTGGGCGCGCAGGTATCAGGGCCAGCAGTTCTACCTCCGCGTGTACACGCCGTCGCACTCG
TTCCGCGACGAGCTCCCCATCCCGAGCAACGCGCTCCGCTGCGGCCGCGCCACCAACGCGAGCGGCAGAAGCCGAACCCT
GTCGCGGTACTAGTTGACAAACCGGCTGGTGCTTGTCAACGACCCTAACACAACACCAGGAGTTACTCGGCCATGACAAG
TTTTGGCCAGGTATATATACCGTATACGCAAATGCATCAAAGTTTTACTCGGCCATATCACAAGTTTGGCTGGTTGGGTT
TATTTAGCGTGAGTTCAGTTTGTAAGGCGTAAATGAACTCCATATAAACAAGGGGTGGGACCAAAGTGTAGCCTATATGC
CTTTTCTTACTCGCCAATGCACATTGCCAGGTTTAATTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis