Browse Element(s) Details


Os.17565.1.S1_at

Description gb:AK060894.1
DB_XREF= gi:32970912
TID=Os.17565.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C07, full insert sequence.
FL= gb:AK104521.1 gb:AK060894.1 gb:AK072630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4741011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47350NANA4+27886625..27888644retrotransposon protein, putative, unclassified
LOC_Os04g47360Os.52261.1.S1_at11/114+27889666..27894512Prolyl endopeptidase, putative, expressed
LOC_Os04g47370OsAffx.4111.1.S1_at11/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_at10/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_x_at10/114+27895775..27898428expressed protein
LOC_Os04g47380Os.24554.1.A1_at11/114+27898899..27903554expressed protein
LOC_Os04g47390OsAffx.4112.1.S1_at11/114+27904538..27906003GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g47400Os.53095.1.S1_at10/114+27907923..27911197Pollen-specific protein NTP303 precursor, putative, expressed
LOC_Os04g47410Os.17565.1.S1_at11/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47410Os.31630.1.S1_x_at1/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47420Os.51085.1.S1_at11/114+27918643..27920807LILLIM08, putative, expressed
LOC_Os04g47430Os.46500.1.S1_at1/114+27923914..27925208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g47440Os.46500.2.S1_at1/114+27925863..27926431hypothetical protein
LOC_Os04g47450OsAffx.26501.1.S1_at11/114+27936978..27938033expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17565.1.S1_at--867--51Chr04:27916437..27916461 (25 bp)
ATTGATATTAATCCTCGTGGTCCTG
LOC_Os04g47410
Os.17565.1.S1_at--235--4551Chr04:27916464..27916484 (21 bp)
GCCCTTGTTGATATTCCATGCTTAT
LOC_Os04g47410
Os.17565.1.S1_at--695--631Chr04:27916840..27916860 (21 bp)
ATGCTTATCTTGCTCTTACGAACCA
LOC_Os04g47410
Os.17565.1.S1_at--522--1531Chr04:27917015..27917039 (25 bp)
AGCAGGGTTCATCCATTCAGCAAAG
LOC_Os04g47410
Os.17565.1.S1_at--1032--6911Chr04:27917056..27917080 (25 bp)
GTATGATCTTTGCATCTCTAAACAG
LOC_Os04g47410
Os.17565.1.S1_at--77--1371Chr04:27917129..27917153 (25 bp)
AGAGCTAGACCTTACACATGCCGAG
LOC_Os04g47410
Os.17565.1.S1_at--434--1311Chr04:27917152..27917176 (25 bp)
AGATGTAATCTCCTGCCGGTGCTGT
LOC_Os04g47410
Os.17565.1.S1_at--166--6891Chr04:27917187..27917211 (25 bp)
GTATATGCTCTATATCTGGACTCAC
LOC_Os04g47410
Os.17565.1.S1_at--879--7431Chr04:27917272..27917296 (25 bp)
GTGTATGCGCATTTTTCTCCTAGAA
LOC_Os04g47410
Os.17565.1.S1_at--1138--6591Chr04:27917303..27917327 (25 bp)
GATTGATCGATATCCATACCTTGAT
LOC_Os04g47410
Os.17565.1.S1_at--700--5971Chr04:27917386..27917417 (25 bp)
GAGAACTCTTATCAGCGTACCGGAT
LOC_Os04g47410
Target Sequence 
ATTGATATTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATG
AAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGA
AATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAG
AGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCA
CTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTATGCGCATTTTTCTC
CTAGAAAATCTGGATTGATCGATATCCATACCTTGATCTGAGTATGCTCAAATCTGGATTTTTTTTTCTTATNCATTTGT
AGATTCAGAAATGGTGAGAACTCTTATCAGCGTACCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis