Browse Element(s) Details


Os.52261.1.S1_at

Description gb:AK065953.1
DB_XREF= gi:32975971
TID=Os.52261.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045K08, full insert sequence.
FL= gb:AK065953.1 gb:AK069664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4736011/11Prolyl endopeptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47310Os.11940.1.S1_at11/114+27865144..27866751expressed protein
LOC_Os04g47320OsAffx.26499.1.S1_at11/114+27872062..27875526Mechanosensitive ion channel family protein, expressed
LOC_Os04g47330Os.55318.1.S1_at11/114+27877256..27878536Rho-GTPase-activating protein, putative, expressed
LOC_Os04g47350NANA4+27886625..27888644retrotransposon protein, putative, unclassified
LOC_Os04g47360Os.52261.1.S1_at11/114+27889666..27894512Prolyl endopeptidase, putative, expressed
LOC_Os04g47370OsAffx.4111.1.S1_at11/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_at10/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_x_at10/114+27895775..27898428expressed protein
LOC_Os04g47380Os.24554.1.A1_at11/114+27898899..27903554expressed protein
LOC_Os04g47390OsAffx.4112.1.S1_at11/114+27904538..27906003GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g47400Os.53095.1.S1_at10/114+27907923..27911197Pollen-specific protein NTP303 precursor, putative, expressed
LOC_Os04g47410Os.17565.1.S1_at11/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47410Os.31630.1.S1_x_at1/114+27912027..27917693DHHC zinc finger domain containing protein, expressed
LOC_Os04g47420Os.51085.1.S1_at11/114+27918643..27920807LILLIM08, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004287molecular_functionprolyl oligopeptidase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52261.1.S1_at--1039--2271Chr04:27893996..27894020 (25 bp)
AAATCCATGGGTCTCACCAATATTT
LOC_Os04g47360
Os.52261.1.S1_at--394--6611Chr04:27894024..27894048 (25 bp)
GATTGGTTAGTTGGCTATGGTCATT
LOC_Os04g47360
Os.52261.1.S1_at--1083--6451Chr04:27894083..27894107 (25 bp)
GATAAAATTTATTCCCTCTTACACT
LOC_Os04g47360
Os.52261.1.S1_at--346--1051Chr04:27894118..27894142 (25 bp)
AGGTGAGACTCAAACCTGGGTGAAT
LOC_Os04g47360
Os.52261.1.S1_at--823--2251Chr04:27894151..27894175 (25 bp)
AAATATGTGCGCTCACCACGGTTTT
LOC_Os04g47360
Os.52261.1.S1_at--127--1031Chr04:27894203..27894227 (25 bp)
AGGTAGTCATAACGCACGCACGCAA
LOC_Os04g47360
Os.52261.1.S1_at--193--6611Chr04:27894254..27894278 (25 bp)
GATTGGGCCGACAAATCCATCTTGG
LOC_Os04g47360
Os.52261.1.S1_at--474--6611Chr04:27894333..27894357 (25 bp)
GATTGGCATGGTAACTTTGCATCTT
LOC_Os04g47360
Os.52261.1.S1_at--427--2531Chr04:27894345..27894369 (25 bp)
AACTTTGCATCTTCTATCTTCTTAT
LOC_Os04g47360
Os.52261.1.S1_at--1033--1911Chr04:27894429..27894453 (25 bp)
ACGGATTTCATCACCTATTCCTAGA
LOC_Os04g47360
Os.52261.1.S1_at--733--8071Chr04:27894488..27894512 (25 bp)
GGAGCTTGATCATGATTTTCTACCC
LOC_Os04g47360
Target Sequence 
AAATCCATGGGTCTCACCAATATTTAGAGATTGGTTAGTTGGCTATGGTCATTAGATAGGTGTCTAAAAAAACCGTGATG
TGAGAAGGATAAAATTTATTCCCTCTTACACTCGCCATAAGAAGGTGAGACTCAAACCTGGGTGAATGTATTCACAAATA
TGTGCGCTCACCACGGTTTTTTTTTTTAGAATTACACAGTACAACACAGGTAGTCATAACGCACGCACGCAAACTTTACC
CCTACGAGCATCTTCGAAGATTGGGCCGACAAATCCATCTTGGAGATTGACGAAGTCACCACAGAATTTGTAATGTAATT
GGTTGGGTTTTTATAGTGATTGGCATGGTAACTTTGCATCTTCTATCTTCTTATGTAGTTCGTTGAAAAAAAATAGTGAT
TGGCATGGTTGATACTCGATATGTACATATATTACGGATTTCATCACCTATTCCTAGATGGAAAACAGTTGTGAAACTAT
GAATGTATAAAAGGAGCTTGATCATGATTTTCTACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis