Browse Element(s) Details


OsAffx.26499.1.S1_at

Description tigr:9632.m04569
TID=OsAffx.26499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mechanosensitive ion channel, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4732011/11Mechanosensitive ion channel family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47260OsAffx.14310.1.S1_s_at11/114+27845921..27847884expressed protein
LOC_Os04g47270Os.53652.1.S1_at10/114+27848037..27851280amine oxidase family protein, putative, expressed
LOC_Os04g47280Os.419.2.S1_at11/114+27852512..27855504glycosyl hydrolase family 29, putative, expressed
LOC_Os04g47290OsAffx.4110.1.S1_at11/114+27856467..27860700expressed protein
LOC_Os04g47300OsAffx.14311.1.S1_s_at11/114+27860417..27863201Calcium-dependent protein kinase, putative, expressed
LOC_Os04g47310Os.11940.1.S1_at11/114+27865144..27866751expressed protein
LOC_Os04g47320OsAffx.26499.1.S1_at11/114+27872062..27875526Mechanosensitive ion channel family protein, expressed
LOC_Os04g47330Os.55318.1.S1_at11/114+27877256..27878536Rho-GTPase-activating protein, putative, expressed
LOC_Os04g47350NANA4+27886625..27888644retrotransposon protein, putative, unclassified
LOC_Os04g47360Os.52261.1.S1_at11/114+27889666..27894512Prolyl endopeptidase, putative, expressed
LOC_Os04g47370OsAffx.4111.1.S1_at11/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_at10/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_x_at10/114+27895775..27898428expressed protein
LOC_Os04g47380Os.24554.1.A1_at11/114+27898899..27903554expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26499.1.S1_at--298--6911Chr04:27874863..27874887 (25 bp)
GTATGATTGCTTCACACTGTCTGAC
LOC_Os04g47320
OsAffx.26499.1.S1_at--1063--2171Chr04:27874876..27874900 (25 bp)
ACACTGTCTGACTTGGTTCTAAACT
LOC_Os04g47320
OsAffx.26499.1.S1_at--949--411Chr04:27874936..27874960 (25 bp)
ATCATGACGACAATCTTCCTCCGAT
LOC_Os04g47320
OsAffx.26499.1.S1_at--204--5311Chr04:27874971..27874995 (25 bp)
GAAGGTCTATTATCCGAACAGCCAG
LOC_Os04g47320
OsAffx.26499.1.S1_at--528--6331Chr04:27875044..27875068 (25 bp)
GATGCAGTCGATTTCTCTGTTCATG
LOC_Os04g47320
OsAffx.26499.1.S1_at--875--2051Chr04:27875265..27875289 (25 bp)
ACATTGGTACCCTGGATCCATGGTT
LOC_Os04g47320
OsAffx.26499.1.S1_at--1005--571Chr04:27875280..27875304 (25 bp)
ATCCATGGTTGTTCTCCGTGACGTG
LOC_Os04g47320
OsAffx.26499.1.S1_at--149--1031Chr04:27875324..27875348 (25 bp)
AGGTATCCATATGGTGCCGTCACAC
LOC_Os04g47320
OsAffx.26499.1.S1_at--771--5231Chr04:27875437..27875461 (25 bp)
GAATACCGGATGTTGCCACTCGACA
LOC_Os04g47320
OsAffx.26499.1.S1_at--621--5671Chr04:27875458..27875482 (25 bp)
GACATCAACGTTCGGAATGCGCCAA
LOC_Os04g47320
OsAffx.26499.1.S1_at--440--5271Chr04:27875472..27875496 (25 bp)
GAATGCGCCAATGATCCAGTCTTTG
LOC_Os04g47320
Target Sequence 
GTATGATTGCTTCACACTGTCTGACTTGGTTCTAAACTGTTGCGAAATTCAGGTAGTCGTCGAGGAAATGAACATCATGA
CGACAATCTTCCTCCGATACGACAACCTGAAGGTCTATTATCCGAACAGCCAGCTCGCCATCCAACCAATCATGAATTAC
TACAGGAGTCCTGATATGGGAGATGCAGTCGATTTCTCTGTTCATGTCGCTACGCCTGTGGAGAAACTGGCCCTGATGAA
GGAAAGACTAATGCATTACCTTGACAACAAGAAAGAACATTGGTACCCTGGATCCATGGTTGTTCTCCGTGACGTGGATG
ACACAAACAAGCTAAAGGTATCCATATGGTGCCGTCACACGATCAACTTCCAAGACATGGGGATGAGATTCGAGAGGAGG
GAGCTATTGCTCCAAGAAATGATCAAGATCTTGAAAGATCTAGACATCGAATACCGGATGTTGCCACTCGACATCAACGT
TCGGAATGCGCCAATGATCCAGTCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis