Browse Element(s) Details


OsAffx.4110.1.S1_at

Description tigr:9632.m04566
TID=OsAffx.4110.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4729011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47240Os.11767.1.S1_s_at11/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47240Os.11767.1.S1_at10/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47250Os.8021.1.S1_x_at10/114+27842337..27844542Cytochrome P450 86A2, putative, expressed
LOC_Os04g47260OsAffx.14310.1.S1_s_at11/114+27845921..27847884expressed protein
LOC_Os04g47270Os.53652.1.S1_at10/114+27848037..27851280amine oxidase family protein, putative, expressed
LOC_Os04g47280Os.419.2.S1_at11/114+27852512..27855504glycosyl hydrolase family 29, putative, expressed
LOC_Os04g47290OsAffx.4110.1.S1_at11/114+27856467..27860700expressed protein
LOC_Os04g47300OsAffx.14311.1.S1_s_at11/114+27860417..27863201Calcium-dependent protein kinase, putative, expressed
LOC_Os04g47310Os.11940.1.S1_at11/114+27865144..27866751expressed protein
LOC_Os04g47320OsAffx.26499.1.S1_at11/114+27872062..27875526Mechanosensitive ion channel family protein, expressed
LOC_Os04g47330Os.55318.1.S1_at11/114+27877256..27878536Rho-GTPase-activating protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4110.1.S1_at--224--7911Chr04:27859074..27859098 (25 bp)
GGTTGCCAATGTTTGTTCTGGTTTT
LOC_Os04g47290
OsAffx.4110.1.S1_at--206--7511Chr04:27859113..27859137 (25 bp)
GTGGACATTCTTTGACCTTACTTCA
LOC_Os04g47290
OsAffx.4110.1.S1_at--318--1291Chr04:27859316..27859340 (25 bp)
AGATCGTTTCTGAGGCTTCATCACA
LOC_Os04g47290
OsAffx.4110.1.S1_at--299--6211Chr04:27859327..27859351 (25 bp)
GAGGCTTCATCACACCTTATCAAAT
LOC_Os04g47290
OsAffx.4110.1.S1_at--61--6171Chr04:27859369..27859393 (25 bp)
GAGGCTACCGTGATCCAACAATTGG
LOC_Os04g47290
OsAffx.4110.1.S1_at--456--9831Chr04:27859407..27859431 (25 bp)
TAAATCTACAATGCACTTCCTTCCA
LOC_Os04g47290
OsAffx.4110.1.S1_at--747--10651Chr04:27859423..27859790 (25 bp)
TTCCTTCCAGGTTCTTACAAGTACA
LOC_Os04g47290
OsAffx.4110.1.S1_at--116--7311Chr04:27859793..27859817 (25 bp)
GTGCGAGGATCAACTACCTTACCAA
LOC_Os04g47290
OsAffx.4110.1.S1_at--40--7351Chr04:27859844..27859868 (25 bp)
GTGAACCGACATGGGTCCTTTTCAA
LOC_Os04g47290
OsAffx.4110.1.S1_at--62--771Chr04:27859955..27859979 (25 bp)
ATGTGACTGGACTCGAAGCTGCTAA
LOC_Os04g47290
OsAffx.4110.1.S1_at--1105--2031Chr04:27859991..27860015 (25 bp)
ACTATTTGGGTGATGGCGACTTTGC
LOC_Os04g47290
Target Sequence 
GGTTGCCAATGTTTGTTCTGGTTTTGATGATCCATCTAGGTGGACATTCTTTGACCTTACTTCAATATATGATGATTATG
CTGACAAATCAACAACAATTGTGGAGGCTGAATTTTACAATGCTAGCCATTTGCTGCCACTGAATGATGAGCAGATCGTT
TCTGAGGCTTCATCACACCTTATCAAATGCATACAGGATTTTGAGGAGGCTACCGTGATCCAACAATTGGTCAGAAGATC
TCCTAAATCTACAATGCACTTCCTTCCAGGTTCTTACAAGTACACAGTGCGAGGATCAACTACCTTACCAAATTTGTTTA
TTGCTGGTGATTGGATAGTGAACCGACATGGGTCCTTTTCAAAGGAAAAGGCATATGTGACTGGACTCGAAGCTGCTAAT
AGGGTGGTGGACTATTTGGGTGATGGCGACTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis