Browse Element(s) Details


Os.419.2.S1_at

Description gb:AK067427.1
DB_XREF= gi:32977445
TID=Os.419.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.419 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsUV-DDB mRNA for UV-damaged DNA binding protein, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107E16, full insert sequence.
FL= gb:AK067427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4728011/11glycosyl hydrolase family 29, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47220Os.11386.1.S1_at11/114+27827487..27829439Aquaporin RWC3, putative, expressed
LOC_Os04g47240Os.11767.1.S1_s_at11/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47240Os.11767.1.S1_at10/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47250Os.8021.1.S1_x_at10/114+27842337..27844542Cytochrome P450 86A2, putative, expressed
LOC_Os04g47260OsAffx.14310.1.S1_s_at11/114+27845921..27847884expressed protein
LOC_Os04g47270Os.53652.1.S1_at10/114+27848037..27851280amine oxidase family protein, putative, expressed
LOC_Os04g47280Os.419.2.S1_at11/114+27852512..27855504glycosyl hydrolase family 29, putative, expressed
LOC_Os04g47290OsAffx.4110.1.S1_at11/114+27856467..27860700expressed protein
LOC_Os04g47300OsAffx.14311.1.S1_s_at11/114+27860417..27863201Calcium-dependent protein kinase, putative, expressed
LOC_Os04g47310Os.11940.1.S1_at11/114+27865144..27866751expressed protein
LOC_Os04g47320OsAffx.26499.1.S1_at11/114+27872062..27875526Mechanosensitive ion channel family protein, expressed
LOC_Os04g47330Os.55318.1.S1_at11/114+27877256..27878536Rho-GTPase-activating protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004560molecular_functionalpha-L-fucosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.419.2.S1_at--533--5091Chr04:27852934..27852958 (25 bp)
GCACCCTCCAATGTTCTTCAGGAAA
LOC_Os04g47280
Os.419.2.S1_at--876--4951Chr04:27852909..27852933 (25 bp)
GCATATACTCTTACTGGGCTCCAGA
LOC_Os04g47280
Os.419.2.S1_at--1025--7611Chr04:27852867..27852891 (25 bp)
GGGAAATGCTCTTTGATCTCGGACA
LOC_Os04g47280
Os.419.2.S1_at--607--8151Chr04:27852847..27852871 (25 bp)
GGACAATCTGCTTCATTCAATGTGA
LOC_Os04g47280
Os.419.2.S1_at--172--4911Chr04:27852818..27852842 (25 bp)
GCTTCAGGAGCCTATCCAGATGGGA
LOC_Os04g47280
Os.419.2.S1_at--246--4731Chr04:27852707..27852731 (25 bp)
GCTGTTTCAATTTCCAGTTGTCGAA
LOC_Os04g47280
Os.419.2.S1_at--550--3851Chr04:27852673..27852697 (25 bp)
CTGAAGCTATCTATTGACGGTGCAA
LOC_Os04g47280
Os.419.2.S1_at--692--5751Chr04:27852658..27852682 (25 bp)
GACGGTGCAAGAGCAGATCCACTTA
LOC_Os04g47280
Os.419.2.S1_at--239--6371Chr04:27852643..27852667 (25 bp)
GATCCACTTATCTCATTTTTCGGTG
LOC_Os04g47280
Os.419.2.S1_at--165--10531Chr04:27852616..27852640 (25 bp)
TTCACGGATTCATTTTCAGTCACAT
LOC_Os04g47280
Os.419.2.S1_at--437--6191Chr04:27852533..27852557 (25 bp)
GAGGACAGACCATTCTTTTGGCAAC
LOC_Os04g47280
Target Sequence 
GCACCCTCCAATGTTCTTCAGGAAAGCATATACTCTTACTGGGCTCCAGAGGAAGGGCAGAGCTCCTGGGAAATGCTCTT
TGATCTCGGACAATCTGCTTCATTCAATGTGATCCAGCTTCAGGAGCCTATCCAGATGGGACAACGTGTAATCAAGTTCC
GTGTGGAAATCTTGGTGGATGAATTGTGGCAAACAATTGTTGAAGGCACAACAATTGGTTACAAGAGGCTGTTTCAATTT
CCAGTTGTCGAAGGTCAATTTCTGAAGCTATCTATTGACGGTGCAAGAGCAGATCCACTTATCTCATTTTTCGGTGTTTT
CACGGATTCATTTTCAGTCACATATAGCTTAGAGAATCATGAGAAACCATCGGTTGTTAATAGTAGTGAAGTAATAATGT
TGAGGACAGACCATTCTTTTGGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.419.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis