Browse Element(s) Details


Os.11386.1.S1_at

Description gb:AK058323.1
DB_XREF= gi:32968341
TID=Os.11386.1
CNT=118
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.11386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B07, full insert sequence.
FL= gb:AK104736.1 gb:AK065188.1 gb:AK058323.1 gb:AK098849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4722011/11Aquaporin RWC3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47180Os.5902.1.S2_at11/114+27796943..27802869expressed protein
LOC_Os04g47180Os.5902.1.S1_at11/114+27796943..27802869expressed protein
LOC_Os04g47190Os.22522.1.A1_a_at11/114+27807363..27811467Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os04g47200OsAffx.26498.1.S1_at10/114+27814011..27815573expressed protein
LOC_Os04g47210Os.43567.1.S1_x_at4/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47210Os.38172.1.S1_x_at2/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47220Os.11386.1.S1_at11/114+27827487..27829439Aquaporin RWC3, putative, expressed
LOC_Os04g47240Os.11767.1.S1_s_at11/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47240Os.11767.1.S1_at10/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47250Os.8021.1.S1_x_at10/114+27842337..27844542Cytochrome P450 86A2, putative, expressed
LOC_Os04g47260OsAffx.14310.1.S1_s_at11/114+27845921..27847884expressed protein
LOC_Os04g47270Os.53652.1.S1_at10/114+27848037..27851280amine oxidase family protein, putative, expressed
LOC_Os04g47280Os.419.2.S1_at11/114+27852512..27855504glycosyl hydrolase family 29, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006833biological_processwater transport
GO:0009651biological_processresponse to salt stress
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11386.1.S1_at--105--171Chr04:27829176..27829200 (25 bp)
ATTATTGTGGAGTCGACGTTCCTCT
LOC_Os04g47220
Os.11386.1.S1_at--943--8651Chr04:27829181..27829205 (25 bp)
TGTGGAGTCGACGTTCCTCTTCAAG
LOC_Os04g47220
Os.11386.1.S1_at--1151--5651Chr04:27829190..27829214 (25 bp)
GACGTTCCTCTTCAAGTTTGTTGTA
LOC_Os04g47220
Os.11386.1.S1_at--833--10671Chr04:27829194..27829218 (25 bp)
TTCCTCTTCAAGTTTGTTGTACTAC
LOC_Os04g47220
Os.11386.1.S1_at--624--7011Chr04:27829212..27829236 (25 bp)
GTACTACTGTTTTTATCTGAACACA
LOC_Os04g47220
Os.11386.1.S1_at--546--6811Chr04:27829220..27829244 (25 bp)
GTTTTTATCTGAACACAGACTTGTA
LOC_Os04g47220
Os.11386.1.S1_at--1041--9891Chr04:27829252..27829276 (25 bp)
TACTCAGTTGTGTATCCCTCTTTTA
LOC_Os04g47220
Os.11386.1.S1_at--934--7431Chr04:27829261..27829285 (25 bp)
GTGTATCCCTCTTTTACTATGTGCA
LOC_Os04g47220
Os.11386.1.S1_at--360--551Chr04:27829265..27829289 (25 bp)
ATCCCTCTTTTACTATGTGCAAATT
LOC_Os04g47220
Os.11386.1.S1_at--498--8691Chr04:27829280..27829304 (25 bp)
TGTGCAAATTAAGCTATCCTCCTCC
LOC_Os04g47220
Os.11386.1.S1_at--246--571Chr04:27829295..27829319 (25 bp)
ATCCTCCTCCTATTGGAGTTCGGTT
LOC_Os04g47220
Target Sequence 
ATTATTGTGGAGTCGACGTTCCTCTTCAAGTTTGTTGTACTACTGTTTTTATCTGAACACAGACTTGTAATTTCAGTACT
CAGTTGTGTATCCCTCTTTTACTATGTGCAAATTAAGCTATCCTCCTCCTATTGGAGTTCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis