Browse Element(s) Details


OsAffx.26498.1.S1_at

Description tigr:9632.m04556
TID=OsAffx.26498.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4720010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47170OsAffx.26497.1.S1_at11/114+27794627..27796694pollen-specific kinase partner protein, putative, expressed
LOC_Os04g47180Os.5902.1.S2_at11/114+27796943..27802869expressed protein
LOC_Os04g47180Os.5902.1.S1_at11/114+27796943..27802869expressed protein
LOC_Os04g47190Os.22522.1.A1_a_at11/114+27807363..27811467Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os04g47200OsAffx.26498.1.S1_at10/114+27814011..27815573expressed protein
LOC_Os04g47210Os.43567.1.S1_x_at4/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47210Os.38172.1.S1_x_at2/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47220Os.11386.1.S1_at11/114+27827487..27829439Aquaporin RWC3, putative, expressed
LOC_Os04g47240Os.11767.1.S1_s_at11/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47240Os.11767.1.S1_at10/114+27830151..27837777YDA, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26498.1.S1_at--795--3131Chr04:27815475..27815498 (24 bp)
AATTCCGGCGACGAACACTCAACGA
LOC_Os04g47200
OsAffx.26498.1.S1_at--144--8391NONE
GGCGACGAACACTCAACGACGATTG
NONE
OsAffx.26498.1.S1_at--780--9711Chr04:27814274..27814372 (25 bp)
TCAACGACGATTGGGCTGCTCATGC
LOC_Os04g47200
OsAffx.26498.1.S1_at--961--31Chr04:27814265..27814289 (25 bp)
ATTGGGCTGCTCATGCGAGGCGGCA
LOC_Os04g47200
OsAffx.26498.1.S1_at--432--4991Chr04:27814243..27814267 (25 bp)
GCATGCGGCGATTCCGATCCACGAT
LOC_Os04g47200
OsAffx.26498.1.S1_at--1030--6351Chr04:27814228..27814252 (25 bp)
GATCCACGATCGTCGTCATCGCTGA
LOC_Os04g47200
OsAffx.26498.1.S1_at--1119--6391Chr04:27814221..27814245 (25 bp)
GATCGTCGTCATCGCTGAGGACGAT
LOC_Os04g47200
OsAffx.26498.1.S1_at--602--4991Chr04:27814184..27814208 (25 bp)
GACGGATTCCCGGAGGACGATCTGG
LOC_Os04g47200
OsAffx.26498.1.S1_at--43--3971Chr04:27814149..27814173 (25 bp)
CGGATTCATGGAGGATGATCTGAAG
LOC_Os04g47200
OsAffx.26498.1.S1_at--813--5031Chr04:27814116..27814140 (25 bp)
GCAGTTGATGCAGCTCCGATGTAGC
LOC_Os04g47200
OsAffx.26498.1.S1_at--964--631Chr04:27814109..27814133 (25 bp)
ATGCAGCTCCGATGTAGCGGCGGTT
LOC_Os04g47200
Target Sequence 
AATTCCGGCGACGAACACTCAACGACGATTGGGCTGCTCATGCGAGGCGGCATGCGGCGATTCCGATCCACGATCGTCGT
CATCGCTGAGGACGATCATGGGGCGGGAGACGGATTCCCGGAGGACGATCTGGGGGCGGGAGACGGATTCATGGAGGATG
ATCTGAAGGCGGCGGAGCAGTTGATGCAGCTCCGATGTAGCGGCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis