Browse Element(s) Details


Os.5902.1.S2_at

Description gb:AK066088.1
DB_XREF= gi:32976106
TID=Os.5902.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013051G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013051G09, full insert sequence.
FL= gb:AK066088.1 gb:AK062156.1 gb:AK065763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4718011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47130OsAffx.26496.1.S1_at10/114+27771819..27773295expressed protein
LOC_Os04g47140Os.56959.1.S1_at11/114+27775810..27776728expressed protein
LOC_Os04g47140Os.51447.1.S1_s_at1/114+27775810..27776728expressed protein
LOC_Os04g47150Os.53925.1.A1_at11/114+27778105..27780866Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.2.S1_at11/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.1.S1_x_at1/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47170OsAffx.26497.1.S1_at11/114+27794627..27796694pollen-specific kinase partner protein, putative, expressed
LOC_Os04g47180Os.5902.1.S2_at11/114+27796943..27802869expressed protein
LOC_Os04g47180Os.5902.1.S1_at11/114+27796943..27802869expressed protein
LOC_Os04g47190Os.22522.1.A1_a_at11/114+27807363..27811467Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os04g47200OsAffx.26498.1.S1_at10/114+27814011..27815573expressed protein
LOC_Os04g47210Os.43567.1.S1_x_at4/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47210Os.38172.1.S1_x_at2/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47220Os.11386.1.S1_at11/114+27827487..27829439Aquaporin RWC3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5902.1.S2_at--1044--4971Chr04:27797486..27797510 (25 bp)
GCATCGATTCTCTTGTCAGTGATGA
LOC_Os04g47180
Os.5902.1.S2_at--622--8551Chr04:27797416..27797440 (25 bp)
TGGATCATGGATGGACCTTCGGGTT
LOC_Os04g47180
Os.5902.1.S2_at--91--1331Chr04:27797371..27797395 (25 bp)
AGAGGTGTGGGATACTTTGCTTGAT
LOC_Os04g47180
Os.5902.1.S2_at--645--2971Chr04:27797332..27797356 (25 bp)
AATGGTGTTTGACTTGTGGCTTTAA
LOC_Os04g47180
Os.5902.1.S2_at--1039--2811Chr04:27797309..27797333 (25 bp)
AAGATTGTTTTGTTGCCATCCGATG
LOC_Os04g47180
Os.5902.1.S2_at--639--1311Chr04:27797275..27797299 (25 bp)
AGAGTTTATAGTTCGGCACTTCGGC
LOC_Os04g47180
Os.5902.1.S2_at--1073--8211Chr04:27797261..27797285 (25 bp)
GGCACTTCGGCAGGATTTTATTCAC
LOC_Os04g47180
Os.5902.1.S2_at--755--10091Chr04:27797160..27797184 (25 bp)
TAGGCTTGCCTGACTGTTTGCATCA
LOC_Os04g47180
Os.5902.1.S2_at--347--3071Chr04:27797128..27797152 (25 bp)
AATCTTGACTATATGTGGCTCCTAA
LOC_Os04g47180
Os.5902.1.S2_at--548--9571Chr04:27797074..27797098 (25 bp)
TCTTCTATCATTTCTGTTCTCTGTA
LOC_Os04g47180
Os.5902.1.S2_at--281--2171Chr04:27796946..27796970 (25 bp)
ACACCATAGTGCTGCTCCATTTTAA
LOC_Os04g47180
Target Sequence 
GCATCGATTCTCTTGTCAGTGATGAGGTTCCAAGTACATTAGATCGGGTGGTGCTGAAAGACCTGGAGAGTGGATCATGG
ATGGACCTTCGGGTTGATACTGAAGAAGTTGCTATAGAGGTGTGGGATACTTTGCTTGATGATTTACTGGAGGAAATGGT
GTTTGACTTGTGGCTTTAAGATTGTTTTGTTGCCATCCGATGGAAACTGATAGAGTTTATAGTTCGGCACTTCGGCAGGA
TTTTATTCACCAAAAACCATAGTACAAAAAGCTTTGAAAAAGTGAGTGTGACAGATTTAAACAGAGTGTATACAGCGCAG
TAGAGTTAGGCTTGCCTGACTGTTTGCATCATACTATAAATCTTGACTATATGTGGCTCCTAACACTAGGAATTTTTCTT
CTTATTAATGCTTCTTCTATCATTTCTGTTCTCTGTACAGGTGTGAAAGTAGGAAGAATAAGTTCAGTTGTATATGTACT
GCCTAATTATAGTTTTTTTTTTCCTCATGAAAGTAAAACAATTTCCCTTGTTTATCAGATACACCATAGTGCTGCTCCAT
TTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5902.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis