Browse Element(s) Details


Os.56959.1.S1_at

Description gb:AK110633.1
DB_XREF= gi:32995842
TID=Os.56959.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-C01, full insert sequence.
FL= gb:AK110633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4714011/11expressed protein
LOC_Os01g170001/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47100OsAffx.22848.3.S1_x_at2/114+27746726..27752684retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47110OsAffx.14307.1.S1_at11/114+27761777..27762956hypothetical protein
LOC_Os04g47120Os.17954.1.S1_at11/114+27765032..27771465Acyl-CoA thioesterase family protein, expressed
LOC_Os04g47130OsAffx.26496.1.S1_at10/114+27771819..27773295expressed protein
LOC_Os04g47140Os.56959.1.S1_at11/114+27775810..27776728expressed protein
LOC_Os04g47140Os.51447.1.S1_s_at1/114+27775810..27776728expressed protein
LOC_Os04g47150Os.53925.1.A1_at11/114+27778105..27780866Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.2.S1_at11/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.1.S1_x_at1/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47170OsAffx.26497.1.S1_at11/114+27794627..27796694pollen-specific kinase partner protein, putative, expressed
LOC_Os04g47180Os.5902.1.S2_at11/114+27796943..27802869expressed protein
LOC_Os04g47180Os.5902.1.S1_at11/114+27796943..27802869expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56959.1.S1_at--230--3791Chr04:27776264..27776288 (25 bp)
CTCGGCATGACGAGTCGTGGCATGT
LOC_Os04g47140
Os.56959.1.S1_at--306--9431Chr04:27776250..27776274 (25 bp)
TCGTGGCATGTGGTATTTAATCTTA
LOC_Os04g47140
Os.56959.1.S1_at--39--6871Chr04:27776217..27776241 (25 bp)
GTTTGTTTTTGCCATAGCTGTAGCT
LOC_Os04g47140
Os.56959.1.S1_at--595--291Chr04:27776204..27776228 (25 bp)
ATAGCTGTAGCTTTGTTCGCCCAGT
LOC_Os04g47140
Os.56959.1.S1_at--1060--6691Chr04:27776190..27776214 (25 bp)
GTTCGCCCAGTGGTAAACTGTCATT
LOC_Os04g47140
Os.56959.1.S1_at--302--9831Chr04:27776177..27776201 (25 bp)
TAAACTGTCATTACGTACTCCGCAT
LOC_Os04g47140
Os.56959.1.S1_at--908--1871Chr04:27776165..27776189 (25 bp)
ACGTACTCCGCATGTTTTTTCAGAT
LOC_Os04g47140
Os.56959.1.S1_at--836--1911Chr04:27776110..27776134 (25 bp)
ACGGATCATGGCTTGTAACTTGTAT
LOC_Os04g47140
Os.56959.1.S1_at--921--8733Chr09:11362275..11362584 (25 bp)
TGTAACTTGTATTACCTCCGTCCCA
NONE
Os.56959.1.S1_at--334--2855Chr03:28754700..28754724 (25 bp)
AAGTGCAGCCATGAGTTTCAGCGCC
NONE
Os.56959.1.S1_at--252--1211Chr04:27776055..27776079 (25 bp)
AGTTTCAGCGCCCAACTTTGATCAT
LOC_Os04g47140
Target Sequence 
CTCGGCATGACGAGTCGTGGCATGTGGTATTTAATCTTACTTACATGGTTTGTTTTTGCCATAGCTGTAGCTTTGTTCGC
CCAGTGGTAAACTGTCATTACGTACTCCGCATGTTTTTTCAGATGAATGTACATACATGTCAGAATTCAGATGAACGGAT
CATGGCTTGTAACTTGTATTACCTCCGTCCCAAAATAAGTGCAGCCATGAGTTTCAGCGCCCAACTTTGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis