Browse Element(s) Details


Os.5902.1.S1_at

Description gb:AK065763.1
DB_XREF= gi:32975781
TID=Os.5902.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013051G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042N22, full insert sequence.
FL= gb:AK066088.1 gb:AK062156.1 gb:AK065763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4718011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47130OsAffx.26496.1.S1_at10/114+27771819..27773295expressed protein
LOC_Os04g47140Os.56959.1.S1_at11/114+27775810..27776728expressed protein
LOC_Os04g47140Os.51447.1.S1_s_at1/114+27775810..27776728expressed protein
LOC_Os04g47150Os.53925.1.A1_at11/114+27778105..27780866Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.2.S1_at11/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.1.S1_x_at1/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47170OsAffx.26497.1.S1_at11/114+27794627..27796694pollen-specific kinase partner protein, putative, expressed
LOC_Os04g47180Os.5902.1.S2_at11/114+27796943..27802869expressed protein
LOC_Os04g47180Os.5902.1.S1_at11/114+27796943..27802869expressed protein
LOC_Os04g47190Os.22522.1.A1_a_at11/114+27807363..27811467Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os04g47200OsAffx.26498.1.S1_at10/114+27814011..27815573expressed protein
LOC_Os04g47210Os.43567.1.S1_x_at4/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47210Os.38172.1.S1_x_at2/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47220Os.11386.1.S1_at11/114+27827487..27829439Aquaporin RWC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5902.1.S1_at--627--711Chr04:27798917..27798941 (25 bp)
ATGATGCCACTCATTGTGCTAGCTC
LOC_Os04g47180
Os.5902.1.S1_at--57--7331Chr04:27798902..27798926 (25 bp)
GTGCTAGCTCTTTCTTCTACGAAAA
LOC_Os04g47180
Os.5902.1.S1_at--809--5271Chr04:27798838..27798862 (25 bp)
GAATGACACTTCTCAGATCGTACAC
LOC_Os04g47180
Os.5902.1.S1_at--15--6811Chr04:27798766..27798790 (25 bp)
GTTTTCTCAAACTGATTGTCCTCAA
LOC_Os04g47180
Os.5902.1.S1_at--658--1331Chr04:27798724..27798748 (25 bp)
AGAGGATTCGACTGCTTCATCAGCA
LOC_Os04g47180
Os.5902.1.S1_at--661--311Chr04:27798633..27798657 (25 bp)
ATACCATTGGACACCAGCACATCGG
LOC_Os04g47180
Os.5902.1.S1_at--1132--1491Chr04:27798618..27798642 (25 bp)
AGCACATCGGCTAACACACAGCTGG
LOC_Os04g47180
Os.5902.1.S1_at--1075--2751Chr04:27798585..27798609 (25 bp)
AAGACAGACCATGCCAGTCATCCAG
LOC_Os04g47180
Os.5902.1.S1_at--461--2791Chr04:27798557..27798581 (25 bp)
AAGAGGGCACTATCTCGCAGGAGTT
LOC_Os04g47180
Os.5902.1.S1_at--433--4211Chr04:27798409..27798433 (25 bp)
CCCCAAGTCTCTATTCAGATCGAAA
LOC_Os04g47180
Os.5902.1.S1_at--452--3091Chr04:27798269..27798382 (25 bp)
AATACCGACCAATGCTTCGCAGAAG
LOC_Os04g47180
Target Sequence 
ATGATGCCACTCATTGTGCTAGCTCTTTCTTCTACGAAAAAGCTAAGAAGCATCTAATCGAGAGGCTAGACAATCAAAAG
AATGACACTTCTCAGATCGTACACAAATCANAACCCTTTGGGAAATTACTTTCATATTCGGAGAATGATACGTTTTCTCA
AACTGATTGTCCTCAAGAGGATGTTAAACTGTCAGAGGATTCGACTGCTTCATCAGCATTACTGACGACTGAACAAGAGG
ATATTTCATCAAATTCTGACCCACCAATGAAGTTTGGGGAGCTAATACCATTGGACACCAGCACATCGGCTAACACACAG
CTGGATGAATTTAAGACAGACCATGCCAGTCATCCAGTCAAAGAGGGCACTATCTCGCAGGAGTTAACTAGTGAAGGGAT
TGACAGCATGAATGATGCAACAGATACCCCCCAAGTCTCTATTCAGATCGAAACTTCAACTGAAAGCTTGGAACAAATAA
ATACCGACCAATGCTTCGCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis