Browse Element(s) Details


OsAffx.26497.1.S1_at

Description tigr:9632.m04552
TID=OsAffx.26497.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4717011/11pollen-specific kinase partner protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47120Os.17954.1.S1_at11/114+27765032..27771465Acyl-CoA thioesterase family protein, expressed
LOC_Os04g47130OsAffx.26496.1.S1_at10/114+27771819..27773295expressed protein
LOC_Os04g47140Os.56959.1.S1_at11/114+27775810..27776728expressed protein
LOC_Os04g47140Os.51447.1.S1_s_at1/114+27775810..27776728expressed protein
LOC_Os04g47150Os.53925.1.A1_at11/114+27778105..27780866Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.2.S1_at11/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.1.S1_x_at1/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47170OsAffx.26497.1.S1_at11/114+27794627..27796694pollen-specific kinase partner protein, putative, expressed
LOC_Os04g47180Os.5902.1.S2_at11/114+27796943..27802869expressed protein
LOC_Os04g47180Os.5902.1.S1_at11/114+27796943..27802869expressed protein
LOC_Os04g47190Os.22522.1.A1_a_at11/114+27807363..27811467Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os04g47200OsAffx.26498.1.S1_at10/114+27814011..27815573expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005089molecular_functionRho guanyl-nucleotide exchange factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26497.1.S1_at--210--8271Chr04:27795840..27795864 (25 bp)
GGCAGAAGCACGACTGTGCGAGCCA
LOC_Os04g47170
OsAffx.26497.1.S1_at--892--2451Chr04:27795890..27795914 (25 bp)
AACAATGGCGTTCTTGCGGAGATTC
LOC_Os04g47170
OsAffx.26497.1.S1_at--950--1251Chr04:27795909..27795933 (25 bp)
AGATTCGCATCCCTGAGCTGTACAA
LOC_Os04g47170
OsAffx.26497.1.S1_at--1000--2711Chr04:27795932..27796082 (25 bp)
AAGCAAACGCTTCCCAAGTGCGGGC
LOC_Os04g47170
OsAffx.26497.1.S1_at--166--4651Chr04:27796089..27796113 (25 bp)
GCGTGGGCGACCTGATCTACCGGCA
LOC_Os04g47170
OsAffx.26497.1.S1_at--386--8831Chr04:27796101..27796125 (25 bp)
TGATCTACCGGCACATGTCGTTCCC
LOC_Os04g47170
OsAffx.26497.1.S1_at--429--6091Chr04:27796142..27796166 (25 bp)
GAGTACCTCCTGGACCGGCTGGAGA
LOC_Os04g47170
OsAffx.26497.1.S1_at--924--2911Chr04:27796277..27796301 (25 bp)
AAGGAGCTCATGGAGTCCGACAAGA
LOC_Os04g47170
OsAffx.26497.1.S1_at--23--971Chr04:27796506..27796530 (25 bp)
AGGACGTTGGGCAAGCCATCCTGGA
LOC_Os04g47170
OsAffx.26497.1.S1_at--1033--5991Chr04:27796550..27796574 (25 bp)
GAGAGCCTGGCTTACAACATAGTGA
LOC_Os04g47170
OsAffx.26497.1.S1_at--574--1111Chr04:27796570..27796594 (25 bp)
AGTGACGTGTATAGACGACGTTCTT
LOC_Os04g47170
Target Sequence 
GGCAGAAGCACGACTGTGCGAGCCAGATCCACAAGGCGGCCATGGCCATCAACAATGGCGTTCTTGCGGAGATTCGCATC
CCTGAGCTGTACAAGCAAACGCTTCCCAAGTGCGGGCGGGCGAGCGTGGGCGACCTGATCTACCGGCACATGTCGTTCCC
GGGCAAGTTCTCGCCGGAGTACCTCCTGGACCGGCTGGAGATCTCGTCGGAGCACGACGCCCTCGAGGCGGCCGACCGCG
TCGAGGCGGCGATGCACGTGTGGCGGCGGAAGGCGAGCCAGGGGCACTCCAGGTCGCCGTGGAGCGCCGTCAAGGAGCTC
ATGGAGTCCGACAAGAACGTGATGCTGGCGAGCCGCGCCGGCGACGTCCTGCTCTGCCTCAAGCAGCGCTTCCCCGGCCT
CTCCCAGACCACCCTGGACGCCAGCAAGATCCAGTACAACAAGGACGTTGGGCAAGCCATCCTGGAGGGCTACTCCAGGG
TGCTGGAGAGCCTGGCTTACAACATAGTGACGTGTATAGACGACGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis