Browse Element(s) Details


Os.55318.1.S1_at

Description gb:AK107862.1
DB_XREF= gi:32993071
TID=Os.55318.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-B10, full insert sequence.
FL= gb:AK107862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4733011/11Rho-GTPase-activating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47280Os.419.2.S1_at11/114+27852512..27855504glycosyl hydrolase family 29, putative, expressed
LOC_Os04g47290OsAffx.4110.1.S1_at11/114+27856467..27860700expressed protein
LOC_Os04g47300OsAffx.14311.1.S1_s_at11/114+27860417..27863201Calcium-dependent protein kinase, putative, expressed
LOC_Os04g47310Os.11940.1.S1_at11/114+27865144..27866751expressed protein
LOC_Os04g47320OsAffx.26499.1.S1_at11/114+27872062..27875526Mechanosensitive ion channel family protein, expressed
LOC_Os04g47330Os.55318.1.S1_at11/114+27877256..27878536Rho-GTPase-activating protein, putative, expressed
LOC_Os04g47350NANA4+27886625..27888644retrotransposon protein, putative, unclassified
LOC_Os04g47360Os.52261.1.S1_at11/114+27889666..27894512Prolyl endopeptidase, putative, expressed
LOC_Os04g47370OsAffx.4111.1.S1_at11/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_at10/114+27895775..27898428expressed protein
LOC_Os04g47370Os.52724.1.S1_x_at10/114+27895775..27898428expressed protein
LOC_Os04g47380Os.24554.1.A1_at11/114+27898899..27903554expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55318.1.S1_at--109--4651Chr04:27877424..27877448 (25 bp)
GCGTCACTGCATTCGCTGCGCTGCG
LOC_Os04g47330
Os.55318.1.S1_at--910--9231Chr04:27877397..27877421 (25 bp)
TCCTAGTGGGCACCGGTCGTCAGTC
LOC_Os04g47330
Os.55318.1.S1_at--969--9631Chr04:27877378..27877402 (25 bp)
TCAGTCGCGGCCACCGGTAGTTGCT
LOC_Os04g47330
Os.55318.1.S1_at--150--3931Chr04:27877371..27877395 (25 bp)
CGGCCACCGGTAGTTGCTCTGGTTT
LOC_Os04g47330
Os.55318.1.S1_at--386--6671Chr04:27877359..27877383 (25 bp)
GTTGCTCTGGTTTCGATGACCATTA
LOC_Os04g47330
Os.55318.1.S1_at--943--4051Chr04:27877346..27877370 (25 bp)
CGATGACCATTATAGCTGCTCTGTT
LOC_Os04g47330
Os.55318.1.S1_at--1039--1591Chr04:27877333..27877357 (25 bp)
AGCTGCTCTGTTTTGGTGTACCTGG
LOC_Os04g47330
Os.55318.1.S1_at--28--7731Chr04:27877319..27877343 (25 bp)
GGTGTACCTGGGAACTGGAAAGTCT
LOC_Os04g47330
Os.55318.1.S1_at--628--1771Chr04:27877314..27877338 (25 bp)
ACCTGGGAACTGGAAAGTCTGTACA
LOC_Os04g47330
Os.55318.1.S1_at--308--1151Chr04:27877299..27877323 (25 bp)
AGTCTGTACAAATCGGAGTGTTGGC
LOC_Os04g47330
Os.55318.1.S1_at--52--8211Chr04:27877273..27877297 (25 bp)
GGAAGTGCGCGAATGATAAGATGAA
LOC_Os04g47330
Target Sequence 
GCGTCACTGCATTCGCTGCGCTGCGCCTCCTAGTGGGCACCGGTCGTCAGTCGCGGCCACCGGTAGTTGCTCTGGTTTCG
ATGACCATTATAGCTGCTCTGTTTTGGTGTACCTGGGAACTGGAAAGTCTGTACAAATCGGAGTGTTGGCGGGAAGTGCG
CGAATGATAAGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis