Browse Element(s) Details


Os.9246.1.S1_at

Description gb:AB024987.1
DB_XREF= gi:6331703
GEN=cycB2;os;1
TID=Os.9246.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9246 (NCBI UniGene Cluster)
DEF=Oryza sativa cycB2;os;1 mRNA for cyclin, complete cds.
PROD=cyclin
FL= gb:AB024987.1 gb:AK070211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4758011/11G2/mitotic-specific cyclin 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47530OsAffx.4115.1.S1_at11/114+27973372..27976315expressed protein
LOC_Os04g47550Os.24756.1.S1_at11/114+27978515..27981013expressed protein
LOC_Os04g47550Os.24756.2.S1_x_at11/114+27978515..27981013expressed protein
LOC_Os04g47560NANA4+27985496..27991883retrotransposon protein, putative, unclassified
LOC_Os04g47570OsAffx.14316.1.S1_at10/114+27994114..27999115Protein kinase domain containing protein
LOC_Os04g47570OsAffx.15844.1.S1_at1/114+27994114..27999115Protein kinase domain containing protein
LOC_Os04g47580Os.9246.1.S1_at11/114+27999622..28002577G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os04g47590Os.28054.1.S1_at11/114+28005406..28021730Niemann-Pick C type protein family protein, expressed
LOC_Os04g47600OsAffx.19542.3.S1_x_at3/114+28025944..28030166retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9246.1.S1_at--245--2271Chr04:28000344..28000368 (25 bp)
AAATGCTCAAGTACCGACCTTCGCT
LOC_Os04g47580
Os.9246.1.S1_at--945--1491Chr04:28000295..28000319 (25 bp)
AGCACAATGTGCTCTCACTCGTTGC
LOC_Os04g47580
Os.9246.1.S1_at--204--9691Chr04:28000281..28000305 (25 bp)
TCACTCGTTGCCAGCAGTGGACAAA
LOC_Os04g47580
Os.9246.1.S1_at--838--7511Chr04:28000265..28000289 (25 bp)
GTGGACAAAGACCTGCGAACTACAT
LOC_Os04g47580
Os.9246.1.S1_at--1052--3951Chr04:28000113..28000253 (25 bp)
CGGAGAGCAGCTTCTTGAGTGTTCT
LOC_Os04g47580
Os.9246.1.S1_at--778--9931Chr04:28000020..28000044 (25 bp)
TACGTTCAAGTTTGGGTGTGCAGCC
LOC_Os04g47580
Os.9246.1.S1_at--1023--4811Chr04:27999983..28000007 (25 bp)
GCTCTCTTCTTGCTTGAGTCAGGAG
LOC_Os04g47580
Os.9246.1.S1_at--789--6651Chr04:27999928..27999952 (25 bp)
GTTGAATGAATCTATTCCCCTGGAT
LOC_Os04g47580
Os.9246.1.S1_at--1023--7331Chr04:27999845..27999869 (25 bp)
GTGCAGCAGATTTACCTTACTACAG
LOC_Os04g47580
Os.9246.1.S1_at--980--1731Chr04:27999832..27999856 (25 bp)
ACCTTACTACAGCTCTTTTGTGGTA
LOC_Os04g47580
Os.9246.1.S1_at--679--7491Chr04:27999774..27999798 (25 bp)
GTGGTGGTCAGTCCTTCAGTTATAC
LOC_Os04g47580
Target Sequence 
AAATGCTCAAGTACCGACCTTCGCTTCTTNCTGCTGCTGCAGTTTACACAGCACAATGTGCTCTCACTCGTTGCCAGCAG
TGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCTTGAGTGTTCTAGGATGATGGTAGATTTCCA
CCAGAAGGCNGGAGCAGGCAAGCTCACCGGCGTGCACCGGAAATACAGTACGTTCAAGTTTGGGTGTGCAGCCAAAACGG
AGCCTGCTCTCTTCTTGCTTGAGTCAGGAGCAGGAGGTTACAACCTTNAGAAGCAGCCTTGTTGAATGAATCTATTCCCC
TGGATAGATTTTTTTAACTTAGCTTCAGAACAACTACAGCAAGCATGTTGATGCTTCACAAAAGTGCAGCAGATTTACCT
TACTACAGCTCTTTTGTGGTAATGTAAACTTGGTGTGAATGATGGATAATCTGGGTGGTGGTCAGTCCTTCAGTTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis