Browse Element(s) Details


OsAffx.2410.1.A1_x_at

Description tigr:9629.m06442
TID=OsAffx.2410.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6499011/11GPI transamidase subunit PIG-U family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64960Os.10671.1.S1_at11/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64960Os.45428.1.S1_at1/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64970Os.12646.1.S1_at11/111+38037090..38041730Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os01g64980Os.32637.1.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.2.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.3.S1_x_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64990Os.46001.1.S1_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g64990OsAffx.2410.1.A1_x_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g65000Os.25771.1.S1_at9/111+38062129..38064490Ammonium transporter 2, putative, expressed
LOC_Os01g65010OsAffx.29815.1.S1_x_at1/111+38066314..38069570D-mannose binding lectin family protein, expressed
LOC_Os01g65030Os.52175.1.S1_at11/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65030OsAffx.11739.1.S1_x_at2/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65040OsAffx.11739.1.S1_x_at11/111+38079472..38079912hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2410.1.A1_x_at--116--9631Chr01:38055157..38055181 (25 bp)
TCATGTACTTGGATCTGGACTGCCG
LOC_Os01g64990
OsAffx.2410.1.A1_x_at--526--8531Chr01:38055172..38055196 (25 bp)
TGGACTGCCGATTTGATGTGCTGCG
LOC_Os01g64990
OsAffx.2410.1.A1_x_at--930--4771Chr01:38055191..38055215 (25 bp)
GCTGCGGCTGGCTCAAATTCTGAGA
LOC_Os01g64990
OsAffx.2410.1.A1_x_at--526--6111Chr01:38055228..38055544 (25 bp)
GAGTGCTGTGGCTCCACAAATCCAA
LOC_Os01g64990
OsAffx.2410.1.A1_x_at--1034--2411Chr01:38055590..38055614 (25 bp)
AAAACACGCTATTTTCTGAGTGCAT
LOC_Os01g64990
OsAffx.2410.1.A1_x_at--1062--9711Chr01:38057721..38057745 (25 bp)
TCAACCTGTTTTGGTGATGGCCACC
LOC_Os01g64990
OsAffx.2410.1.A1_x_at--455--9971Chr01:38058159..38058183 (25 bp)
TACCGTGAATTCATGCCGTCAGTAT
LOC_Os01g64990
OsAffx.2410.1.A1_x_at--316--10111Chr01:38058378..38058398 (21 bp)
TATGGCAGTCATTTGTTACACACAG
LOC_Os01g64990
OsAffx.2410.1.A1_x_at--838--1451Chr01:38058502..38058526 (25 bp)
AGCAGAACTTTTCTCTGGTCAGGAA
LOC_Os01g64990
OsAffx.2410.1.A1_x_at--182--951Chr01:38058531..38058555 (25 bp)
AGGAGCTACCTTTACGTACTTCTGA
LOC_Os01g64990
OsAffx.2410.1.A1_x_at--673--7011Chr01:38058546..38058570 (25 bp)
GTACTTCTGAGTGGATGCAGCCTTC
LOC_Os01g64990
Target Sequence 
TCATGTACTTGGATCTGGACTGCCGATTTGATGTGCTGCGGCTGGCTCAAATTCTGAGAAATCGCATTGGAGAGTGCTGT
GGCTCCACAAATCCAACAAATGAAGAATTTGCAAAGGATGGCGCTACAAATAGTTTTTCCGAAAACACGCTATTTTCTGA
GTGCATGAAGCGTTTCTTGAGAACTCTATCACTGCAGAGTATGACAGAAACAGTTGTCCAAAAATTACGCAATTTTTTGC
AACTTCAACCTGTTTTGGTGATGGCCACCAAGGCACCCATATATGGCGAAGGATTCACTGGAAATGATTTCCAAAGGGGT
ACTTCAAAACAGATGTTAGAGGATTCAACAATGAGATGCATAGGTCAGGAGGAAGAGAAAAACATCTCATACCGTGAATT
CATGCCGTCAGTATGGCAGTCATTTGTTACACACAGGATAAAGCTACAAGATTTAGGACAAGAAGCAGAACTTTTCTCTG
GTCAGGAAAACAAGGAGCTACCTTTACGTACTTCTGAGTGGATGCAGCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2410.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis