Browse Element(s) Details


Os.12646.1.S1_at

Description gb:AB125305.1
DB_XREF= gi:46917335
GEN=SAPK4
TID=Os.12646.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12646 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SAPK4 mRNA for serinethreonine protein kinase SAPK4, complete cds.
PROD=serinethreonine protein kinase SAPK4
FL= gb:AB125305.1 gb:AK060576.1 gb:AK070407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6497011/11Serine/threonine-protein kinase SAPK7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64920Os.31808.2.S1_x_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.2.S1_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.1.S1_at10/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.40235.1.S1_at1/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64930Os.34638.1.S1_at10/111+38017149..38020006expressed protein
LOC_Os01g64940NANA1+38021191..38022534transposon protein, putative, unclassified
LOC_Os01g64949OsAffx.23902.2.S1_at11/111+38022947..38023270hypothetical protein
LOC_Os01g64960Os.10671.1.S1_at11/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64960Os.45428.1.S1_at1/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64970Os.12646.1.S1_at11/111+38037090..38041730Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os01g64980Os.32637.1.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.2.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.3.S1_x_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64990Os.46001.1.S1_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g64990OsAffx.2410.1.A1_x_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g65000Os.25771.1.S1_at9/111+38062129..38064490Ammonium transporter 2, putative, expressed
LOC_Os01g65010OsAffx.29815.1.S1_x_at1/111+38066314..38069570D-mannose binding lectin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12646.1.S1_at--141--2411Chr01:38041003..38041027 (25 bp)
AAACAGCTTATTGCCCGCATTTTTG
LOC_Os01g64970
Os.12646.1.S1_at--315--10691Chr01:38041013..38041037 (25 bp)
TTGCCCGCATTTTTGTCAACAATCC
LOC_Os01g64970
Os.12646.1.S1_at--905--5851Chr01:38041171..38041195 (25 bp)
GAGCCACCCGTGGTTCTTGAAGAAC
LOC_Os01g64970
Os.12646.1.S1_at--525--5991Chr01:38041214..38041238 (25 bp)
GAGACTGCGCAAGCCATGTACTACA
LOC_Os01g64970
Os.12646.1.S1_at--211--9871Chr01:38041235..38041259 (25 bp)
TACAGGAGGGACAACTCCGTGCCTT
LOC_Os01g64970
Os.12646.1.S1_at--1146--4231Chr01:38041465..38041489 (25 bp)
CCGTATGAGCTCACTGCGCATATGA
LOC_Os01g64970
Os.12646.1.S1_at--18--5071Chr01:38041502..38041526 (25 bp)
GCAGCTATTGTGTAGATAATCCGGC
LOC_Os01g64970
Os.12646.1.S1_at--919--9731Chr01:38041518..38041542 (25 bp)
TAATCCGGCTTACTATGGAACTGCG
LOC_Os01g64970
Os.12646.1.S1_at--445--10391Chr01:38041553..38041577 (25 bp)
TTTTCGCTGTAAATTTGCTTCTGTT
LOC_Os01g64970
Os.12646.1.S1_at--148--10611Chr01:38041571..38041595 (25 bp)
TTCTGTTTGGCGTTTCTTCGTGTAA
LOC_Os01g64970
Os.12646.1.S1_at--601--7571Chr01:38041610..38041634 (25 bp)
GGGCGCTTGGACTTCAATTGTCTGA
LOC_Os01g64970
Target Sequence 
AAACAGCTTATTGCCCGCATTTTTGTCAACAATCCATTGAGGAGAATCACGATGAAGGNAAATAAAGAGCCACCCGTGGT
TCTTGAAGAACCTCCCCAGGGAGCTCACGGAGACTGCGCAAGCCATGTACTACAGGAGGGACAACTCCGTGCCTTCCTTC
TCAGACCAGACCTCAGAAGAGATCATGAAGATTGTTCAAGAAGCAAGAACCATGCCGAAATCATCCAGGACAGGCTACTG
GAGCGACGCGGGTTCAGACGAGGAGGAGAAGGAAGAGGAAGAGAGGCCAGAAGAGAACGAGGAAGAGGAGGAAGATGAGT
ACGATAAGAGGGTCAAAGAGGTCCATGCGAGCGGGGAGCTCCGTATGAGCTCACTGCGCATATGAAAAAGTTTGTGTGCA
GCTATTGTGTAGATAATCCGGCTTACTATGGAACTGCGGTGTATGCAATTTTCGCTGTAAATTTGCTTCTGTTTGGCGTT
TCTTCGTGTAACATAACTTACTTGGGGGCGCTTGGACTTCAATTGTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis