Browse Element(s) Details


Os.31808.1.S1_at

Description gb:AK106718.1
DB_XREF= gi:32991927
TID=Os.31808.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nuclear matrix protein (P0677H08.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-G03, full insert sequence.
FL= gb:AK106718.1 gb:AK070435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6492010/11nuclear matrix protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64870Os.8109.1.S1_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64870Os.8109.1.S2_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64880OsAffx.11735.1.S1_at11/111+37988627..37989282expressed protein
LOC_Os01g64890Os.5643.1.S1_at11/111+37991082..37994186CorA-like Mg2+ transporter protein, expressed
LOC_Os01g64900Os.50901.1.S1_at11/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.1.S1_at9/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.2.S1_x_at8/111+37994186..37998672expressed protein
LOC_Os01g64910Os.36459.2.S1_x_at11/111+38009383..38010915UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64920Os.31808.2.S1_x_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.2.S1_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.1.S1_at10/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.40235.1.S1_at1/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64930Os.34638.1.S1_at10/111+38017149..38020006expressed protein
LOC_Os01g64940NANA1+38021191..38022534transposon protein, putative, unclassified
LOC_Os01g64949OsAffx.23902.2.S1_at11/111+38022947..38023270hypothetical protein
LOC_Os01g64960Os.10671.1.S1_at11/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64960Os.45428.1.S1_at1/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64970Os.12646.1.S1_at11/111+38037090..38041730Serine/threonine-protein kinase SAPK7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31808.1.S1_at--110--10171Chr01:38013571..38013595 (25 bp)
TATCATGCCGAGAGCTCTCTTTCAA
LOC_Os01g64920
Os.31808.1.S1_at--610--9551Chr01:38013554..38013578 (25 bp)
TCTTTCAAGGCTGTGTACGGCTGCA
LOC_Os01g64920
Os.31808.1.S1_at--1147--3931Chr01:38013521..38013545 (25 bp)
CGGCTGCAACGCTGTACAAAATAAT
LOC_Os01g64920
Os.31808.1.S1_at--281--10751Chr01:38013312..38013336 (25 bp)
TTGAATCAAGTCACAGCCTGCACGT
LOC_Os01g64920
Os.31808.1.S1_at--228--7991Chr01:38013168..38013283 (25 bp)
GGATGCTGCTGCCTGTACAGATCTT
LOC_Os01g64920
Os.31808.1.S1_at--1028--2651Chr01:38013097..38013121 (25 bp)
AAGCCTGCATTTCTACAGAGCCACA
LOC_Os01g64920
Os.31808.1.S1_at--396--6331NONE
GATGCACGCACTTGTGTCTGTGTAC
NONE
Os.31808.1.S1_at--395--3071Chr01:38013041..38013065 (25 bp)
AATCAGGCTTGACATATTTGCTTTC
LOC_Os01g64920
Os.31808.1.S1_at--1003--1211Chr01:38013013..38013037 (25 bp)
AGTTCAAGACCAAGCATTTCCCAGT
LOC_Os01g64920
Os.31808.1.S1_at--42--5091Chr01:38012982..38013006 (25 bp)
GCAGCCACACGACGTTTCAGTTTTG
LOC_Os01g64920
Os.31808.1.S1_at--1111--10471Chr01:38012967..38012991 (25 bp)
TTCAGTTTTGGACGTCACAACGCCG
LOC_Os01g64920
Target Sequence 
TATCATGCCGAGAGCTCTCTTTCAAGGCTGTGTACGGCTGCACGTTGCAGCGGCTGCAACGCTGTACAAAATAATGTGCG
AGGCGGCCGCAGCCGCAGTAGTGCAGCCGTAACAGGCCCCAAGTTTGTGCAGTACTTGTATGTTTTTTCTTTTTTCTTTT
TTTCCCCCTTTGATTCTTTAGACAGTAGTAANTTTCGCTAAGCAAATGTACCTTTTTTCCCCCTGAAAACGGTTCTAAAT
TTGACACATCAATGATGAATTGAATCAAGTCACAGCCTGCACGTTGAGCCTCTTCCCGGCGCTTCGTTTTCCGGATGCTG
CTGCCTGTACAGATCTTCAAAACTTGACACCATGGTTCTGAATCTTCTGATAAACGAAGGGAAAAGCCTGCATTTCTACA
GAGCCACAGCGATGCACGCACTTGTGTCTGTGTACGTATAATCAGGCTTGACATATTTGCTTTCAAGAGTTCAAGACCAA
GCATTTCCCAGTCCGATCGCAGCCACACGACGTTTCAGTTTTGGACGTCACAACGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis