Browse Element(s) Details


OsAffx.11735.1.S1_at

Description tigr:9629.m06429
TID=OsAffx.11735.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6488011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64830OsAffx.11734.2.S1_x_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.2.S1_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.3.S1_at10/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.1.S1_at1/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64840OsAffx.11734.1.S1_at11/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64840OsAffx.11734.2.S1_x_at1/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64850OsAffx.9521.1.S1_at11/111+37973868..37976141Subtilisin N-terminal Region family protein
LOC_Os01g64860Os.17663.1.S1_at11/111+37978683..37981230Subtilisin N-terminal Region family protein, expressed
LOC_Os01g64870Os.8109.1.S1_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64870Os.8109.1.S2_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64880OsAffx.11735.1.S1_at11/111+37988627..37989282expressed protein
LOC_Os01g64890Os.5643.1.S1_at11/111+37991082..37994186CorA-like Mg2+ transporter protein, expressed
LOC_Os01g64900Os.50901.1.S1_at11/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.1.S1_at9/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.2.S1_x_at8/111+37994186..37998672expressed protein
LOC_Os01g64910Os.36459.2.S1_x_at11/111+38009383..38010915UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64920Os.31808.2.S1_x_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.2.S1_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.1.S1_at10/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.40235.1.S1_at1/111+38012908..38016291nuclear matrix protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006829biological_processzinc ion transport
GO:0015691biological_processcadmium ion transport
GO:0005886cellular_componentplasma membrane
GO:0005385molecular_functionzinc ion transporter activity
GO:0015086molecular_functioncadmium ion transporter activity
GO:0015434molecular_functioncadmium-transporting ATPase activity
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11735.1.S1_at--890--7231Chr01:37989210..37989234 (25 bp)
GTCGCCGTCTTTGTCTGGAGTCCAG
LOC_Os01g64880
OsAffx.11735.1.S1_at--382--4491Chr01:37989207..37989231 (25 bp)
GCCGTCTTTGTCTGGAGTCCAGTGA
LOC_Os01g64880
OsAffx.11735.1.S1_at--951--3891Chr01:37989196..37989220 (25 bp)
CTGGAGTCCAGTGAAGGCGCTGAAC
LOC_Os01g64880
OsAffx.11735.1.S1_at--1118--4991Chr01:37989128..37989152 (25 bp)
GCATGGTCATCTGGTGGCCGAGCCC
LOC_Os01g64880
OsAffx.11735.1.S1_at--2--3511Chr01:37989127..37989151 (25 bp)
CATGGTCATCTGGTGGCCGAGCCCG
LOC_Os01g64880
OsAffx.11735.1.S1_at--634--871Chr01:37988767..37988789 (23 bp)
ATGGCGAGTGCCGAGATGTCGTCGT
LOC_Os01g64880
OsAffx.11735.1.S1_at--355--6651Chr01:37988744..37988768 (25 bp)
GTTGATGGGCATGCTACCTGCGAAG
LOC_Os01g64880
OsAffx.11735.1.S1_at--769--8871Chr01:37988742..37988766 (25 bp)
TGATGGGCATGCTACCTGCGAAGGC
LOC_Os01g64880
OsAffx.11735.1.S1_at--77--8231Chr01:37988737..37988761 (25 bp)
GGCATGCTACCTGCGAAGGCGGTCC
LOC_Os01g64880
OsAffx.11735.1.S1_at--50--631Chr01:37988734..37988758 (25 bp)
ATGCTACCTGCGAAGGCGGTCCTCG
LOC_Os01g64880
OsAffx.11735.1.S1_at--950--3811Chr01:37988727..37988751 (25 bp)
CTGCGAAGGCGGTCCTCGCGACGAC
LOC_Os01g64880
Target Sequence 
GTCGCCGTCTTTGTCTGGAGTCCAGTGAAGGCGCTGAACAAGGCCGGCCTCGAGGCGTCGGTGTGGGCCTACGGCAGCAG
CGGCATGGTCATCTGGTGGCCGAGCCCGTACATCGTCGCCTCTGGCGTCCTCCTCATGGCCTCCTTCTTCGAGTGGCTCT
TCCCTCCCTTGCAGTGCCTGGCCGTGGCGGCCGTCGTCGCCGGCGCGCCGCCGATGGCGAGTGCCGAGATGTCGTCGTTG
ATGGGCATGCTACCTGCGAAGGCGGTCCTCGCGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis