Browse Element(s) Details


Os.17663.1.S1_at

Description gb:AK099470.1
DB_XREF= gi:32984679
TID=Os.17663.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative subtilisin-like protease (P0677H08.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023O14, full insert sequence.
FL= gb:AK099469.1 gb:AK099470.1 gb:AK062271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6486011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64820OsAffx.9523.1.S1_x_at11/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64820Os.47313.1.A1_at10/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64830OsAffx.11734.2.S1_x_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.2.S1_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.3.S1_at10/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.1.S1_at1/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64840OsAffx.11734.1.S1_at11/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64840OsAffx.11734.2.S1_x_at1/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64850OsAffx.9521.1.S1_at11/111+37973868..37976141Subtilisin N-terminal Region family protein
LOC_Os01g64860Os.17663.1.S1_at11/111+37978683..37981230Subtilisin N-terminal Region family protein, expressed
LOC_Os01g64870Os.8109.1.S1_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64870Os.8109.1.S2_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64880OsAffx.11735.1.S1_at11/111+37988627..37989282expressed protein
LOC_Os01g64890Os.5643.1.S1_at11/111+37991082..37994186CorA-like Mg2+ transporter protein, expressed
LOC_Os01g64900Os.50901.1.S1_at11/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.1.S1_at9/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.2.S1_x_at8/111+37994186..37998672expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17663.1.S1_at--51--2771Chr01:37980737..37980761 (25 bp)
AAGACGTTCGTCAGGGTGGTCACCA
LOC_Os01g64860
Os.17663.1.S1_at--834--1171Chr01:37980876..37980900 (25 bp)
AGTACACGCTGGTGTTGCGCGGCAA
LOC_Os01g64860
Os.17663.1.S1_at--1157--2211Chr01:37980915..37980939 (25 bp)
ACAAGGTGCTGCACGGGTCGCTGAC
LOC_Os01g64860
Os.17663.1.S1_at--353--8031Chr01:37980972..37980996 (25 bp)
GGAGTCCGATTGTGGCAACGACTTT
LOC_Os01g64860
Os.17663.1.S1_at--704--2591Chr01:37980988..37981012 (25 bp)
AACGACTTTGAGCTCAACACGGCTG
LOC_Os01g64860
Os.17663.1.S1_at--492--9711Chr01:37981001..37981025 (25 bp)
TCAACACGGCTGTAGACTCTTCTTT
LOC_Os01g64860
Os.17663.1.S1_at--307--1411Chr01:37981014..37981038 (25 bp)
AGACTCTTCTTTTCACTCTTGTGTA
LOC_Os01g64860
Os.17663.1.S1_at--763--5491Chr01:37981076..37981100 (25 bp)
GAACATGTTGTTCGTCTCTAGCTGT
LOC_Os01g64860
Os.17663.1.S1_at--232--6711Chr01:37981085..37981109 (25 bp)
GTTCGTCTCTAGCTGTTGGGCAAAT
LOC_Os01g64860
Os.17663.1.S1_at--989--6571Chr01:37981123..37981147 (25 bp)
GTTAGTTAGTGCAGTCCGTGAGTTT
LOC_Os01g64860
Os.17663.1.S1_at--542--10831Chr01:37981147..37981171 (25 bp)
TTGGTATATGCTGCTCGAATGCCCC
LOC_Os01g64860
Target Sequence 
AAGACGTTCGTCAGGGTGGTCACCAACGTCGGCGCCGGCGCGGCGAGCTACAGGGCGAAGGTGAAGGGCAACCTGGGTGG
GCTCGCCGTCAGCGTCACGCCGAGCAGGCTGGTGTTCGGGAAGAAGGGCGAGACGCAGAAGTACACGCTGGTGTTGCGCG
GCAAGATCAAGGGCGCGGACAAGGTGCTGCACGGGTCGCTGACGTGGGTGGATGACGCCGGCAAGTACACGGTGAGGAGT
CCGATTGTGGCAACGACTTTGAGCTCAACACGGCTGTAGACTCTTCTTTTCACTCTTGTGTACTGTAGCGTGCAAGTTGA
TTCACATATCTGAAGTTCTGAACATGTTGTTCGTCTCTAGCTGTTGGGCAAATAATGCTTTTGGTGGTTAGTTAGTGCAG
TCCGTGAGTTTTGGTATATGCTGCTCGAATGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis