Browse Element(s) Details


Os.50901.1.S1_at

Description gb:AK059347.1
DB_XREF= gi:32969365
TID=Os.50901.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C03, full insert sequence.
FL= gb:AK059347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6490011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64840OsAffx.11734.1.S1_at11/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64840OsAffx.11734.2.S1_x_at1/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64850OsAffx.9521.1.S1_at11/111+37973868..37976141Subtilisin N-terminal Region family protein
LOC_Os01g64860Os.17663.1.S1_at11/111+37978683..37981230Subtilisin N-terminal Region family protein, expressed
LOC_Os01g64870Os.8109.1.S1_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64870Os.8109.1.S2_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64880OsAffx.11735.1.S1_at11/111+37988627..37989282expressed protein
LOC_Os01g64890Os.5643.1.S1_at11/111+37991082..37994186CorA-like Mg2+ transporter protein, expressed
LOC_Os01g64900Os.50901.1.S1_at11/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.1.S1_at9/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.2.S1_x_at8/111+37994186..37998672expressed protein
LOC_Os01g64910Os.36459.2.S1_x_at11/111+38009383..38010915UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64920Os.31808.2.S1_x_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.2.S1_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.1.S1_at10/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.40235.1.S1_at1/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64930Os.34638.1.S1_at10/111+38017149..38020006expressed protein
LOC_Os01g64940NANA1+38021191..38022534transposon protein, putative, unclassified
LOC_Os01g64949OsAffx.23902.2.S1_at11/111+38022947..38023270hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50901.1.S1_at--1153--7051Chr01:37994464..37994488 (25 bp)
GTAAGTCTAAACATAGCTGATTTGT
LOC_Os01g64900
Os.50901.1.S1_at--430--5231Chr01:37994436..37994460 (25 bp)
GAATATTTATTCTCAGGTCGGGAAT
LOC_Os01g64900
Os.50901.1.S1_at--493--7811Chr01:37994421..37994445 (25 bp)
GGTCGGGAATACCTGTTGTGCATCA
LOC_Os01g64900
Os.50901.1.S1_at--738--6631Chr01:37994407..37994431 (25 bp)
GTTGTGCATCAGATAATGAGTATTG
LOC_Os01g64900
Os.50901.1.S1_at--806--9751Chr01:37994394..37994418 (25 bp)
TAATGAGTATTGTGGCGTTTACAAA
LOC_Os01g64900
Os.50901.1.S1_at--530--2411Chr01:37994371..37994395 (25 bp)
AAAAATCTTGTTTGCATCACCATAT
LOC_Os01g64900
Os.50901.1.S1_at--794--6851Chr01:37994362..37994386 (25 bp)
GTTTGCATCACCATATCACCTTGTA
LOC_Os01g64900
Os.50901.1.S1_at--320--4971Chr01:37994358..37994382 (25 bp)
GCATCACCATATCACCTTGTAAATA
LOC_Os01g64900
Os.50901.1.S1_at--340--7111Chr01:37994322..37994346 (25 bp)
GTCAGATGAGCATATATATCATTTG
LOC_Os01g64900
Os.50901.1.S1_at--459--10791Chr01:37994300..37994324 (25 bp)
TTGTTGATCTTTAGGCGATTTGCCA
LOC_Os01g64900
Os.50901.1.S1_at--330--8851Chr01:37994296..37994320 (25 bp)
TGATCTTTAGGCGATTTGCCATTGA
LOC_Os01g64900
Target Sequence 
GTAAGTCTAAACATAGCTGATTTGTGTAGAATATTTATTCTCAGGTCGGGAATACCTGTTGTGCATCAGATAATGAGTAT
TGTGGCGTTTACAAAAAATCTTGTTTGCATCACCATATCACCTTGTAAATACAAAATAGATAGTCAGATGAGCATATATA
TCATTTGTTGATCTTTAGGCGATTTGCCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis