Browse Element(s) Details


OsAffx.21707.1.S1_at

Description gb:NM_190779.1
DB_XREF= gi:34908641
GEN=P0677H08.21
TID=OsAffx.21707.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0677H08.21 (P0677H08.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g649009/11expressed protein
LOC_Os08g231501/11Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64840OsAffx.11734.1.S1_at11/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64840OsAffx.11734.2.S1_x_at1/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64850OsAffx.9521.1.S1_at11/111+37973868..37976141Subtilisin N-terminal Region family protein
LOC_Os01g64860Os.17663.1.S1_at11/111+37978683..37981230Subtilisin N-terminal Region family protein, expressed
LOC_Os01g64870Os.8109.1.S1_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64870Os.8109.1.S2_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64880OsAffx.11735.1.S1_at11/111+37988627..37989282expressed protein
LOC_Os01g64890Os.5643.1.S1_at11/111+37991082..37994186CorA-like Mg2+ transporter protein, expressed
LOC_Os01g64900Os.50901.1.S1_at11/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.1.S1_at9/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.2.S1_x_at8/111+37994186..37998672expressed protein
LOC_Os01g64910Os.36459.2.S1_x_at11/111+38009383..38010915UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64920Os.31808.2.S1_x_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.2.S1_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.1.S1_at10/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.40235.1.S1_at1/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64930Os.34638.1.S1_at10/111+38017149..38020006expressed protein
LOC_Os01g64940NANA1+38021191..38022534transposon protein, putative, unclassified
LOC_Os01g64949OsAffx.23902.2.S1_at11/111+38022947..38023270hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004425molecular_functionindole-3-glycerol-phosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21707.1.S1_at--92--6291Chr08:13824912..13824934 (22 bp)
GATGCTGGTTTTATCCAACTTATGG
LOC_Os08g23150
OsAffx.21707.1.S1_at--105--4731Chr01:37995308..37995329 (22 bp)
GCTGGTTTTATCCAACTTATGGTGA
LOC_Os01g64900
OsAffx.21707.1.S1_at--148--7871Chr01:37995305..37995329 (25 bp)
GGTTTTATCCAACTTATGGTGATAC
LOC_Os01g64900
OsAffx.21707.1.S1_at--452--811Chr01:37995290..37995314 (25 bp)
ATGGTGATACTTGTCCTGAATCCTC
LOC_Os01g64900
OsAffx.21707.1.S1_at--619--7751Chr01:37995288..37995312 (25 bp)
GGTGATACTTGTCCTGAATCCTCAA
LOC_Os01g64900
OsAffx.21707.1.S1_at--873--6471Chr01:37995285..37995309 (25 bp)
GATACTTGTCCTGAATCCTCAATAG
LOC_Os01g64900
OsAffx.21707.1.S1_at--904--2031Chr01:37995282..37995306 (25 bp)
ACTTGTCCTGAATCCTCAATAGTTC
LOC_Os01g64900
OsAffx.21707.1.S1_at--464--8711Chr01:37995279..37995303 (25 bp)
TGTCCTGAATCCTCAATAGTTCTTT
LOC_Os01g64900
OsAffx.21707.1.S1_at--814--4271Chr01:37995276..37995300 (25 bp)
CCTGAATCCTCAATAGTTCTTTCAA
LOC_Os01g64900
OsAffx.21707.1.S1_at--212--3851NONE
CTGCTTGTAACAGTGATCCTGATGA
NONE
OsAffx.21707.1.S1_at--529--4931Chr01:37995104..37995128 (25 bp)
GCTTGTAACAGTGATCCTGATGAAG
LOC_Os01g64900
Target Sequence 
GATGCTGGTTTTATCCAACTTATGGTGATACTTGTCCTGAATCCTCAATAGTTCTTTCAAGAGAGTTCGTGGGAAGGGTT
CAGCTGATTCTCAAAACAAAAGGCAAGAGATGTTGCTTCCTGGCTCTTCTATTGTCTGCTTGTAACAGTGATCCTGATGA
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis