Browse Element(s) Details


OsAffx.21707.2.S1_x_at

Description tigr:9629.m06431
TID=OsAffx.21707.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g649008/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64840OsAffx.11734.1.S1_at11/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64840OsAffx.11734.2.S1_x_at1/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64850OsAffx.9521.1.S1_at11/111+37973868..37976141Subtilisin N-terminal Region family protein
LOC_Os01g64860Os.17663.1.S1_at11/111+37978683..37981230Subtilisin N-terminal Region family protein, expressed
LOC_Os01g64870Os.8109.1.S1_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64870Os.8109.1.S2_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64880OsAffx.11735.1.S1_at11/111+37988627..37989282expressed protein
LOC_Os01g64890Os.5643.1.S1_at11/111+37991082..37994186CorA-like Mg2+ transporter protein, expressed
LOC_Os01g64900Os.50901.1.S1_at11/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.1.S1_at9/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.2.S1_x_at8/111+37994186..37998672expressed protein
LOC_Os01g64910Os.36459.2.S1_x_at11/111+38009383..38010915UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64920Os.31808.2.S1_x_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.2.S1_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.1.S1_at10/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.40235.1.S1_at1/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64930Os.34638.1.S1_at10/111+38017149..38020006expressed protein
LOC_Os01g64940NANA1+38021191..38022534transposon protein, putative, unclassified
LOC_Os01g64949OsAffx.23902.2.S1_at11/111+38022947..38023270hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21707.2.S1_x_at--101--2971NONE
AATGGCTTTCACAAGCTATCTAATT
NONE
OsAffx.21707.2.S1_x_at--735--3531NONE
CATCCCAGATGCTGTTCTTTCAAGA
NONE
OsAffx.21707.2.S1_x_at--899--5311Chr01:37995239..37995263 (25 bp)
GAAGGGTTCAGCTGATTCTCAAAAC
LOC_Os01g64900
OsAffx.21707.2.S1_x_at--234--5171Chr01:37995209..37995233 (25 bp)
GCAAGAGATGTTGCTTCCTGGCTCT
LOC_Os01g64900
OsAffx.21707.2.S1_x_at--136--4831Chr01:37995109..37995213 (25 bp)
GCTCTTCTATTGTCTGTGATCCTGA
LOC_Os01g64900
OsAffx.21707.2.S1_x_at--831--2431Chr01:37994726..37994747 (22 bp)
AACAGGAGTCGCTGGCCTCAAGAAA
LOC_Os01g64900
OsAffx.21707.2.S1_x_at--550--5851Chr01:37994666..37994690 (25 bp)
GACCAGCTCTGGATTAACTGCTTTT
LOC_Os01g64900
OsAffx.21707.2.S1_x_at--492--5311NONE
GAAGGTGCAACTGCGATTTGCCATT
NONE
OsAffx.21707.2.S1_x_at--716--8231Chr01:37994267..37994291 (25 bp)
GGCAACACTGGTTTGTTACTTCGTT
LOC_Os01g64900
OsAffx.21707.2.S1_x_at--491--2051Chr01:37994250..37994274 (25 bp)
ACTTCGTTTTGTTCTGGATCGGCCA
LOC_Os01g64900
OsAffx.21707.2.S1_x_at--410--2151Chr01:37994211..37994235 (25 bp)
ACAGCCGTTCAGCATAGTCAGTAAA
LOC_Os01g64900
Target Sequence 
AATGGCTTTCACAAGCTATCTAATTATTTGTGCATGATCGTGTCTAAGATTATCTATGAAAACGGCGATAAGGAGTTAGT
GCGCTTGGAATGTCAGAAGTGGGAATTCATTAGTGACACAATTTCAACAGTAAAGGACATTCCCAACTCCCATCCCAGAT
GCTGTTCTTTCAAGAGAGTTCGTGGGAAGGGTTCAGCTGATTCTCAAAACAAAAGGCAAGAGATGTTGCTTCCTGGCTCT
TCTATTGTCTGTGATCCTGATGAAGATGGTGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAGG
AGTCGCTGGCCTCAAGAAAAACAGCAAGAGAGCGTTGGATTCGAGTAATGCACAGACCAGCTCTGGATTAACTGCTTTTA
ACCCGGTAGATAACGTTCGGTGTACTAGATCAAGGAAGGTGCAACTGCGATTTGCCATTGACAAAGGCAACACTGGTTTG
TTACTTCGTTTTGTTCTGGATCGGCCACTGGAAAAAGTGGCACAGCCGTTCAGCATAGTCAGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21707.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis