Browse Element(s) Details


Os.8109.1.S1_a_at

Description gb:AK067351.1
DB_XREF= gi:32977369
TID=Os.8109.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0677H08.19 (P0677H08.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013101G04, full insert sequence.
FL= gb:AK068777.1 gb:AK067351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6487011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64820OsAffx.9523.1.S1_x_at11/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64820Os.47313.1.A1_at10/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64830OsAffx.11734.2.S1_x_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.2.S1_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.3.S1_at10/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.1.S1_at1/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64840OsAffx.11734.1.S1_at11/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64840OsAffx.11734.2.S1_x_at1/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64850OsAffx.9521.1.S1_at11/111+37973868..37976141Subtilisin N-terminal Region family protein
LOC_Os01g64860Os.17663.1.S1_at11/111+37978683..37981230Subtilisin N-terminal Region family protein, expressed
LOC_Os01g64870Os.8109.1.S1_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64870Os.8109.1.S2_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64880OsAffx.11735.1.S1_at11/111+37988627..37989282expressed protein
LOC_Os01g64890Os.5643.1.S1_at11/111+37991082..37994186CorA-like Mg2+ transporter protein, expressed
LOC_Os01g64900Os.50901.1.S1_at11/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.1.S1_at9/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.2.S1_x_at8/111+37994186..37998672expressed protein
LOC_Os01g64910Os.36459.2.S1_x_at11/111+38009383..38010915UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64920Os.31808.2.S1_x_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.2.S1_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.1.S1_at10/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.40235.1.S1_at1/111+38012908..38016291nuclear matrix protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8109.1.S1_a_at--553--5351Chr01:37986239..37986263 (25 bp)
GAAGATGCCTTTGTCCGAATTGCCC
LOC_Os01g64870
Os.8109.1.S1_a_at--434--6971Chr01:37986200..37986224 (25 bp)
GTAGCTGATGTTTCAACGGCTCATT
LOC_Os01g64870
Os.8109.1.S1_a_at--645--9711Chr01:37986188..37986212 (25 bp)
TCAACGGCTCATTATCTCTTCAGGG
LOC_Os01g64870
Os.8109.1.S1_a_at--372--3471Chr01:37986168..37986192 (25 bp)
CAGGGCCCTTGTCGGTTCTGAAAAG
LOC_Os01g64870
Os.8109.1.S1_a_at--1109--10371Chr01:37985680..37985704 (25 bp)
TTTTGTCCGATGAGCAAGTCCTATG
LOC_Os01g64870
Os.8109.1.S1_a_at--1105--1411Chr01:37985616..37985640 (25 bp)
AGAAAACACTGCGTGGCCTGGACAC
LOC_Os01g64870
Os.8109.1.S1_a_at--279--8531Chr01:37985598..37985622 (25 bp)
TGGACACTTAACCTTGACCAACAAG
LOC_Os01g64870
Os.8109.1.S1_a_at--80--5851Chr01:37985583..37985607 (25 bp)
GACCAACAAGGCACTCTATTTTGAG
LOC_Os01g64870
Os.8109.1.S1_a_at--432--8991Chr01:37985100..37985124 (25 bp)
TGAAGCTTGACCTTACAGATCGTAA
LOC_Os01g64870
Os.8109.1.S1_a_at--1149--571Chr01:37985039..37985063 (25 bp)
ATCCAGATTGTTCGACTCTGCCGTA
LOC_Os01g64870
Os.8109.1.S1_a_at--1058--9171Chr01:37985021..37985045 (25 bp)
TGCCGTATCTGTTTCATCTGGTTCA
LOC_Os01g64870
Target Sequence 
GAAGATGCCTTTGTCCGAATTGCCCCTGCTGTGGCAGGTGTAGCTGATGTTTCAACGGCTCATTATCTCTTCAGGGCCCT
TGTCGGTTCTGAAAAGGGGCTTTCTTTAGATATATGGACAACATACCTTGGTGAACTTCTGAAAGTTCATCATGGGAGGC
AAACACATAAAAGTGGAGATCATTTTTTGTCCGATGAGCAAGTCCTATGCATAGGCTCTAGTAGAAAAAGACCTGTTCTG
AAATGGGAAGAAAACACTGCGTGGCCTGGACACTTAACCTTGACCAACAAGGCACTCTATTTTGAGATGTGATGACTTTG
GGCCCAACTCCTCCACCTTTACATTGATATTGGCAGGCCATTGGACTGACAAGTACCAATAAACCATTGAAGCTTGACCT
TACAGATCGTAATTCAAGGGTTGAGAAAGCAAAGGTTGGACCATTTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTT
CATCTGGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8109.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis