Browse Element(s) Details


Os.31808.2.S1_x_at

Description gb:NM_190781.1
DB_XREF= gi:34908645
GEN=P0677H08.23
TID=Os.31808.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31808 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative nuclear matrix protein (P0677H08.23), mRNA.
PROD=putative nuclear matrix protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6492011/11nuclear matrix protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64870Os.8109.1.S1_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64870Os.8109.1.S2_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64880OsAffx.11735.1.S1_at11/111+37988627..37989282expressed protein
LOC_Os01g64890Os.5643.1.S1_at11/111+37991082..37994186CorA-like Mg2+ transporter protein, expressed
LOC_Os01g64900Os.50901.1.S1_at11/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.1.S1_at9/111+37994186..37998672expressed protein
LOC_Os01g64900OsAffx.21707.2.S1_x_at8/111+37994186..37998672expressed protein
LOC_Os01g64910Os.36459.2.S1_x_at11/111+38009383..38010915UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64920Os.31808.2.S1_x_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.2.S1_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.1.S1_at10/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.40235.1.S1_at1/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64930Os.34638.1.S1_at10/111+38017149..38020006expressed protein
LOC_Os01g64940NANA1+38021191..38022534transposon protein, putative, unclassified
LOC_Os01g64949OsAffx.23902.2.S1_at11/111+38022947..38023270hypothetical protein
LOC_Os01g64960Os.10671.1.S1_at11/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64960Os.45428.1.S1_at1/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64970Os.12646.1.S1_at11/111+38037090..38041730Serine/threonine-protein kinase SAPK7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31808.2.S1_x_at--420--3131Chr01:38014873..38015022 (25 bp)
AATTTACCCCTTGCCTGATATAACA
LOC_Os01g64920
Os.31808.2.S1_x_at--374--8551Chr01:38014387..38014411 (25 bp)
TGGAGGTCCCTCAATTGCATGGTTT
LOC_Os01g64920
Os.31808.2.S1_x_at--612--9051Chr01:38014372..38014396 (25 bp)
TGCATGGTTTTGGTCCAGCTGCTAA
LOC_Os01g64920
Os.31808.2.S1_x_at--843--2171Chr01:38014030..38014349 (25 bp)
ACACTTTTGAAGCTCTGTGCGGTCT
LOC_Os01g64920
Os.31808.2.S1_x_at--936--8691Chr01:38014015..38014039 (25 bp)
TGTGCGGTCTTCTTGCTTGTGTCTA
LOC_Os01g64920
Os.31808.2.S1_x_at--613--10731Chr01:38014003..38014027 (25 bp)
TTGCTTGTGTCTACTGTCTTCTGTC
LOC_Os01g64920
Os.31808.2.S1_x_at--59--7151Chr01:38013934..38014012 (25 bp)
GTCTTCTGTCTGTTCCTTAGTAATT
LOC_Os01g64920
Os.31808.2.S1_x_at--583--9051Chr01:38013875..38013899 (25 bp)
TGCAGGATCGCTTTCAGCATCTAAT
LOC_Os01g64920
Os.31808.2.S1_x_at--402--5871Chr01:38013850..38013874 (25 bp)
GAGCCTTCATCTGTCACCAAAATTA
LOC_Os01g64920
Os.31808.2.S1_x_at--995--151Chr01:38013829..38013853 (25 bp)
ATTATCTCCGACTGTGAATCTGCAC
LOC_Os01g64920
Os.31808.2.S1_x_at--1143--9831Chr01:38013795..38013819 (25 bp)
TAAATAACAGCCTTTCCATCCTTTC
LOC_Os01g64920
Target Sequence 
AATTTACCCCTTGCCTGATATAACAGAACTGGAGTTGAAGCTCTCCGAGTATACTAAAAAGATGTCAAATTTGCAACTGA
TGGTTCAGGAGTTAGCATCTAAGTATGACTATAATCCGAATGAAGACTATGCCGAGACAGAGTTAAAACTGAGGGAACAT
TTGCAATCGTTCCTAGAAACAGTAAAATCCTTCAATATGATCTACACTAAGGAAATTCATCCTTGGACACATATGATGGA
GGTCCCTCAATTGCATGGTTTTGGTCCAGCTGCTAATCGCTTGTTGGAGGCATATAACACACTTTTGAAGCTCTGTGCGG
TCTTCTTGCTTGTGTCTACTGTCTTCTGTCTGTTCCTTAGTAATTTGAGGAGCCTACGGGATTCGTATGCAGCAATGGCT
GCAGGATCGCTTTCAGCATCTAATGAGCCTTCATCTGTCACCAAAATTATCTCCGACTGTGAATCTGCACTTACATTCTT
AAATAACAGCCTTTCCATCCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31808.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis